Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5690g00004 ATGAACCCAGGCGTTGTTGTGTCCAGAAAGGACATGGACCGGATCAAAGGCCCGTGGAGCCCCGAGGAGGACGATGCTCTGCAGAACCTGGTGGAGAAGCACGGGCCCAGGAACTGGTCCCTCATCAGTAAGTCCATCCCTGGCCGCTCCGGCAAGTCCTGCAGGCTTCGCTGGTGCAATCAGCTCTCCCCTCAGGTCGAGCACCGGGCCTTCACGCCCGAAGAAGACGACACCATAGTCAGGGCCCATGCTCGCTTCGGGAACAAATGGGCCACCATAGCCCGCTTGCTCCAGGGCAGAACCGACAACGCAATCAAGAACCACTGGAACTCCACCCTGAAGCGCAAGTGCACCTCATCCTTCGTGGACGACCACCTTCCACCGCTTAAGAGGTCCGTCAGTGCCGGTGCGGCCATCCCGGCCATCCCCGTCTCCACGGGACTCTACATCAACCCTCCCACACCCGGTAGCCCCTCCGGATCCGATGTGAGCGAGTCCAGCGTGCCGGTTGCATCCCCCTCACATGTCTTCCGTCCTGTGCCTAGGACTGCTGCGGTTTTACCGCCAGTAGAAACCACCTCCTCCTCCAATGACCCTCCCACTTCCCTTTCCCTGTCCCTTCCCGGTGTTGACTCTTCTGAGGTCTCAAATCGGGTAACCGAGTCAGCCCACCCTGTACCACCGCCACAGCCGTCGACCACCATCCCTTTGCTGCCAATGATGACTGCTGTTGTGCCCCAGTTGAAGCCACCGGGATTGGGGGCTTTCAATCTAAGTGCAGAGTTTTTAGGGGTGATGCAGGAAATGATAAGGAATGAGGTGAGGAGTTATATGGAGCGGCAGAATCCGAATGGGATGTGTTTTCAGGCAGCCGATGATGGGTTTAGGAATGCTTCCGTCAAGCGAATTGGGATTAGCAGGGTGGACTCGTAA 933 0.5831 MNPGVVVSRKDMDRIKGPWSPEEDDALQNLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIVRAHARFGNKWATIARLLQGRTDNAIKNHWNSTLKRKCTSSFVDDHLPPLKRSVSAGAAIPAIPVSTGLYINPPTPGSPSGSDVSESSVPVASPSHVFRPVPRTAAVLPPVETTSSSNDPPTSLSLSLPGVDSSEVSNRVTESAHPVPPPQPSTTIPLLPMMTAVVPQLKPPGLGAFNLSAEFLGVMQEMIRNEVRSYMERQNPNGMCFQAADDGFRNASVKRIGISRVDS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5690g00004 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 117 IPR017930 -
Vium5690g00004 310 Gene3D - 15 67 - -
Vium5690g00004 310 MobiDBLite consensus disorder prediction 189 232 - -
Vium5690g00004 310 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vium5690g00004 310 FunFam MYB transcription factor 16 67 - -
Vium5690g00004 310 MobiDBLite consensus disorder prediction 150 171 - -
Vium5690g00004 310 Gene3D - 69 127 - -
Vium5690g00004 310 PANTHER MYB PROTEIN-RELATED 16 201 - -
Vium5690g00004 310 CDD SANT 18 60 IPR001005 -
Vium5690g00004 310 MobiDBLite consensus disorder prediction 189 220 - -
Vium5690g00004 310 ProSiteProfiles Myb-like domain profile. 11 62 IPR001005 -
Vium5690g00004 310 MobiDBLite consensus disorder prediction 147 175 - -
Vium5690g00004 310 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Vium5690g00004 310 CDD SANT 70 113 IPR001005 -
Vium5690g00004 310 SMART sant 15 64 IPR001005 -
Vium5690g00004 310 SMART sant 67 115 IPR001005 -
Vium5690g00004 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 66 IPR017930 -
Vium5690g00004 310 FunFam Transcription factor MYB44 70 116 - -
Vium5690g00004 310 Pfam Myb-like DNA-binding domain 70 112 IPR001005 -
Vium5690g00004 310 Pfam Myb-like DNA-binding domain 16 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5690g00004 Vium-Chr5690 14906 16413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5690g00004 8 309 MYB Transcription Factor Family AT4G37260 53.235 2.74e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium5690g00004 Myb_DNA-binding 4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5690g00004 K09422 - gmx:780556 468.774