Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5689g00002 ATGAAGAAGATCACTCCTTCTCAATTTCTCTTCCTTTCACTCCTTCTGCTATGCTTCACATCCCTTGCTTTTGGACAAAATATCACTCACCCAGACGAAGTGAAAGCTCTGAAAGATATCGGCAACATACTTGGTAATAAGAACTGGGACACAAATATAGATCCATGCAGTAATAAACCTCCCTGGAATGTAAGTATTGACAAAGACAAAGCCAACTATGTCAGATGCAACTGTTCTATCTCCATTGACGGCTTTTGTCATGTTGTTTCAATAAGGCTGAAAGCACAAAATCTTACGGGCACGCTCCCACCTGAATTGACAGGGCTACCTTACCTTGAAGAAATTGACCTCACTCGCAATTATATTAATGGCACAATACCTGTTGGATGGGGCTCCTCTAAACTTCGCATTATTTGTTTTCTTGGAAATCGACTAACTGGTCCCATCCCTAAAGAGATTGGAAACATCATAACCCTCGAAAGTTTGGTCCTTGAATTCAATCAGTTCACTGGAAATATTACACCGGATCTTGGAAACCTTTCTCACCTTCAAAGATTGCATCTTACTTCTAACAACTTCACTGGAGAACTTCCTCAGACTTTGGCTAAGCTTACATCATTGAGAGAGCTCCGTCTTAATGACAATAACTTCTCTGGAAGGATACCCAGTTTTATTCAAAGATGGACAAATCTTGAAATATTAGAAATTCAAGGTAGTGGTTTAAGTGGGCCAATTCCTTCTGAAATTTCATTTCTGCAAAACTTAAATGATTTGAGAATTACTGACTTGATTAATGGATCGGATTCTACTTTCCCACAAATTAATAATATAACAAAGTTGGAAACACTGATACTAAGGAACTGCCAAATTAGCGACGAATTACCTCCGTATCTTGGGAACATGACAGGCATTGAAACATTAGACCTAAGCTTTAACAAATTACGCGGAAAGATTCCAGAGAACGTTGGAAGCTTATCAAAACTGTCACACGTATATTTCACTGGAAACCAACTTACTGGACCCCTACCTATGTGGGTAGCTGGAGGACGTAAATCTATAGATCTAGATCTTTCATACAACAACTTCACTGATAAAAACTCCTCCGTGGCATGTCAAGAGAATAAAGAAGTGAACTGGTTTGCAAGCTTCCCAATGAGCCAAAATGGACCTGTTACATGTCTGACTAGTGCAAACTGTACAAGACTCTTAGACTATTTTCATATAAACTGTGGTGGTGGACAAGAGACAAGCAGTGAGGGTATAGTGTATGATGATGACTTGGATCATGCAGGGGCAGCAACATCTAAAATGCCCAGAGAAAACTGGGCATATAGCAATACCGGTCATTTCTTGGGTGGTCATAATGAACTAGAGTATATCCAGCAAAGTCAAAATACGCTTTCTATGACTGATTCTGCATTGTATCAGACTGCACGTGTATCTCCCATTTCTTTGACTTATTACGGAACGTGTCTGGAAAATGGAGAGTACACGGTATTGCTGCATTTTGCAGAGATCATGTTCACTGATGATAACACATATAGCAGTCTTGGAAGACGTATATTTGATGTTTACATTCAGAGAAAGCTAGAATTGAAGGATTTCAATATTGCAAATGAAGCAGGAGGAGTTGGAAAGAACATCACAAAAAGGATTTCAACTACTGTTAGTAATAACTCCTTAGAGATTCGATTCTATTGGGCTGGAAAAGGAACAACTGCTATCCCATATAGATCAGTATATGGGCCTCTTATATCAGCTATATCTGCCACTCGTGGTAACTCACTCTGTCTCTGTCACTTTATTCTTCCAATTTTGCATTTAAGGTATCAAATGACACCTATTGCTCTTCTGCAATTATCAGTAAACAGTTCCAGCAAAGGTCCACGTGACATGGCTATAGGGGTTGTAATTGGGATAGCAGTTTCTGCAATAATATTTGTCATACTTGTTGTACTTGCCTGGAGACTTCATATTGGCAAAAGAAATTCATTAACAAAAGAGTTAAAGCATTTAAATTTGCAAGTGGGTTTGTTTACTATGCGTCAAATAAAAGTTGCAACGAATAACTTTGATATTGCTAATAAGATTGGAGAAGGAGGCTTTGGTCCTGTCTACAAGGGTACTTTATCGGATGGCACAACAATAGCAGTTAAGATGCTTTCATCAAAGTCTAAGCAAGGGAACCGTGAGTTTATAAATGAGATAGGGTTGATTTCTGCTTTGCAACACCCTTGTCTTGTCAAACTTTACGGTTGTTGTGTTGAGGGAAATCAGTTGTTGCTGGTTTACGAATATCTGGAAAACAATAGTCTTGCACATGCTTTATTTAGAAATGAAGAATCTTGTTTGCGATTGGATTGGCCAACCAGGCACAAGATTTGTGTTGGTATAGCTAGAGGTTTGGCTTTCCTACATGAAGAATCAAGATTAAAAGTTGTTCACAGAGACATAAAGGCTACTAATGTGTTGTTAGACAAAGATCTGAATCCAAAGATATCTGATTTTGGTCTTGCAAAGCTTGATGATGAAGACAACACTCACATAAGCACAAGAATAGCTGGGACTTATGGATATATGGCACCAGAATATGCAATGCATGGTTATTTAACTGATAAAGCAGATGTCTATAGTTTTGGAGTGGTTGCCTTGGAAATTGTAACTGGAAAGAGTAATACCATCCCGAGACCAAAGCAAGAAGCATTGCATCTTTTAGATTGGGCCCATTTGCTGAAAGAGAAAGGGAATCTGATGGAGCTTGTTGACAGAAGGTTAGGATCAAATTTCAATGAAAAAGAGGTTATGGTGATGATAAAAGTGTGTCTTTTGTGCACAAATGTCACTGCAAATCTTAGGCCTACCATGTCAACAGTACTTAGCATGCTTGAAGGAAAAACTGTGATTCCAGAATATATTTCAGATTCATCTGAAATAATGGATGAAAAGAAACAAGAGGCTATGAGACAATATTACTCTCAAATGGAAGAAAATGAGAACAATGAAACACATAGATATGATAGTTCATCAAAAGAAGGGCCATGGACTGCTTCTACTTCATCAGCTGCAGATTTATATCCTGTCCATACTGATTCTTCTTATTGGGAGAAAAGAAATTAG 3117 0.3831 MKKITPSQFLFLSLLLLCFTSLAFGQNITHPDEVKALKDIGNILGNKNWDTNIDPCSNKPPWNVSIDKDKANYVRCNCSISIDGFCHVVSIRLKAQNLTGTLPPELTGLPYLEEIDLTRNYINGTIPVGWGSSKLRIICFLGNRLTGPIPKEIGNIITLESLVLEFNQFTGNITPDLGNLSHLQRLHLTSNNFTGELPQTLAKLTSLRELRLNDNNFSGRIPSFIQRWTNLEILEIQGSGLSGPIPSEISFLQNLNDLRITDLINGSDSTFPQINNITKLETLILRNCQISDELPPYLGNMTGIETLDLSFNKLRGKIPENVGSLSKLSHVYFTGNQLTGPLPMWVAGGRKSIDLDLSYNNFTDKNSSVACQENKEVNWFASFPMSQNGPVTCLTSANCTRLLDYFHINCGGGQETSSEGIVYDDDLDHAGAATSKMPRENWAYSNTGHFLGGHNELEYIQQSQNTLSMTDSALYQTARVSPISLTYYGTCLENGEYTVLLHFAEIMFTDDNTYSSLGRRIFDVYIQRKLELKDFNIANEAGGVGKNITKRISTTVSNNSLEIRFYWAGKGTTAIPYRSVYGPLISAISATRGNSLCLCHFILPILHLRYQMTPIALLQLSVNSSSKGPRDMAIGVVIGIAVSAIIFVILVVLAWRLHIGKRNSLTKELKHLNLQVGLFTMRQIKVATNNFDIANKIGEGGFGPVYKGTLSDGTTIAVKMLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCVEGNQLLLVYEYLENNSLAHALFRNEESCLRLDWPTRHKICVGIARGLAFLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDDEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEIVTGKSNTIPRPKQEALHLLDWAHLLKEKGNLMELVDRRLGSNFNEKEVMVMIKVCLLCTNVTANLRPTMSTVLSMLEGKTVIPEYISDSSEIMDEKKQEAMRQYYSQMEENENNETHRYDSSSKEGPWTASTSSAADLYPVHTDSSYWEKRN 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5689g00002 1038 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 271 365 - -
Vium5689g00002 1038 Gene3D Ribonuclease Inhibitor 264 382 IPR032675 -
Vium5689g00002 1038 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 30 264 - -
Vium5689g00002 1038 Pfam Protein tyrosine and serine/threonine kinase 693 961 IPR001245 GO:0004672|GO:0006468
Vium5689g00002 1038 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 997 - -
Vium5689g00002 1038 Gene3D - 405 594 - -
Vium5689g00002 1038 Gene3D Transferase(Phosphotransferase) domain 1 767 976 - -
Vium5689g00002 1038 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 660 766 - -
Vium5689g00002 1038 Gene3D Phosphorylase Kinase; domain 1 655 766 - -
Vium5689g00002 1038 FunFam Putative LRR receptor-like serine/threonine-protein kinase 767 974 - -
Vium5689g00002 1038 Gene3D Ribonuclease Inhibitor 28 263 IPR032675 -
Vium5689g00002 1038 Pfam Malectin domain 406 588 IPR021720 -
Vium5689g00002 1038 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Vium5689g00002 1038 CDD STKc_IRAK 697 964 - -
Vium5689g00002 1038 ProSiteProfiles Protein kinase domain profile. 691 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5689g00002 1038 SUPERFAMILY L domain-like 70 394 - -
Vium5689g00002 1038 Pfam Leucine rich repeat 158 217 IPR001611 GO:0005515
Vium5689g00002 1038 SUPERFAMILY Protein kinase-like (PK-like) 675 972 IPR011009 -
Vium5689g00002 1038 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 593 - -
Vium5689g00002 1038 MobiDBLite consensus disorder prediction 992 1021 - -
Vium5689g00002 1038 SMART serkin_6 691 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5689g00002 Vium-Chr5689 8642 19123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5689g00002 24 994 Receptor kinase-like Gene Family AT1G53420 51.777 0.0 955
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium5689g00002 PK_Tyr_Ser-Thr 9.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5689g00002 - - qsa:O6P43_001075 1168.3