Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5687g00016 ATGTTATCAGGGGACATACCTCCAAACCAGACCATTTACATCAAGAATCTCAATGAGAAGGTCAAGAAAGACGAGTTGAAGAGATCTCTGTATTGCTTGTTCTCTCAATATGGAAGGATTTTGGATGTTGTTGCTCTAAAGACACCCAGGCTTCGAGGACAGGCATGGGTTTGTTTCAGTGAAGTCACTGCAGCCAGCAATGCTGTGAGACAAATGCAAAACTTCCCATTTTATGAAAAACCTATGAGAATTCAATATGCAAAAACAAAGTCCGATTGTATTGCAAAAGAAGAGGGTAGTTATGTTCCAAGGGAAAAGAAGAAGAAACAAGAGGAGAAAGCTGAAAGAAAGCGGCGTGCTGAGGAAGCACAACAATCTGCTGCGGCTAATGGCATACATGGTGCTAGTAATGGTGGTCCAACTGTAAGTTTCTGTAATAATTTATGGTGTCTGATTTTCTCTTCTCTCCTCTTACATATTTGGTTCATCAGATCAATCTTCATGTCTGATAGTTTTGTAAGCATGAATGAAACTAGCAAATTAAAGAACAATGATTATTGTCATAGTTTTTGGTTTTGGTTTAGCTGTAGGTCGGTGGATATGATGGTAGTGATTATTGCACTAACATAG 630 0.3889 MLSGDIPPNQTIYIKNLNEKVKKDELKRSLYCLFSQYGRILDVVALKTPRLRGQAWVCFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSYVPREKKKKQEEKAERKRRAEEAQQSAAANGIHGASNGGPTVSFCNNLWCLIFSSLLLHIWFIRSIFMSDSFVSMNETSKLKNNDYCHSFWFWFSCRSVDMMVVIIALT 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5687g00016 209 SMART rrm1_1 11 85 IPR000504 GO:0003723
Vium5687g00016 209 FunFam U1 small nuclear ribonucleoprotein A 4 109 - -
Vium5687g00016 209 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Vium5687g00016 209 CDD RRM1_U1A_like 11 88 - -
Vium5687g00016 209 Gene3D - 4 122 IPR012677 -
Vium5687g00016 209 Coils Coil 104 126 - -
Vium5687g00016 209 SUPERFAMILY RNA-binding domain, RBD 6 101 IPR035979 GO:0003676
Vium5687g00016 209 MobiDBLite consensus disorder prediction 101 134 - -
Vium5687g00016 209 PANTHER UNCHARACTERIZED 8 91 IPR045164 -
Vium5687g00016 209 MobiDBLite consensus disorder prediction 101 123 - -
Vium5687g00016 209 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5687g00016 Vium-Chr5687 166483 169540 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5687g00016 3 126 Eukaryotic Initiation Factors Gene Family AT1G71770 30.159 9.32e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5687g00016 K11094 - gmx:100805822 239.965