Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5687g00015 ATGTTATCAGGGGACATACCTCCAAACCAGACCATTTACATCAAGAATCTCAATGAGAAGGTCAAGAAAGACGAGTTGAAGAGATCTCTGTATTGCTTGTTCTCTCAATATGGAAGGATTTTGGATGTTGTTGCTCTAAAGACACCCAGGCTTCGAGGACAGGCATGGGTTTGTTTCAGTGAAGTCACTGCAGCCAGCAATGCTGTGAGACAAATGCAAAACTTCCCATTTTATGAAAAACCTATGAGAATTCAATATGCAAAAACAAAGTCCGATTGTATTGCAAAAGAAGAGGGTAGTTATGTTCCAAGGGAAAAGAAGAAGAAACAAGAGGAGAAAGCTGAAAGAAAGCGGCGTGCTGAGGAAGCACAACAATCTGCTGCGGCTAATGGCATACATGGTGCTAGTAATGGTGGTCCAACTGCATCATTCCGTCAAGGATCCAGTGCCCAAGAAGCAGCTGCTCCTAATAATATTTTATTCATAGAGAATTTGCCCCATGAAACTACTGGTAGGATGCTTGAAATGCTCTTCGAACAATACCCAGGTTTCAAGGAAGTGCGCTTGATTGAAGCCAAGCCAGGAATTGCATTTGTTGATTTTGAAGATGAGGTGCAATCATCCATGGCCATGCAGGCTCTCAATGGCTTCAAAATCACTCCACTGAATCCCATGAATATAACCTTTGCTAAGAAGTAG 699 0.4235 MLSGDIPPNQTIYIKNLNEKVKKDELKRSLYCLFSQYGRILDVVALKTPRLRGQAWVCFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSYVPREKKKKQEEKAERKRRAEEAQQSAAANGIHGASNGGPTASFRQGSSAQEAAAPNNILFIENLPHETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALNGFKITPLNPMNITFAKK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5687g00015 232 Gene3D - 4 119 IPR012677 -
Vium5687g00015 232 Gene3D - 147 232 IPR012677 -
Vium5687g00015 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Vium5687g00015 232 CDD RRM1_U1A_like 11 88 - -
Vium5687g00015 232 SMART rrm1_1 11 85 IPR000504 GO:0003723
Vium5687g00015 232 SMART rrm1_1 159 228 IPR000504 GO:0003723
Vium5687g00015 232 FunFam U1 small nuclear ribonucleoprotein A 4 109 - -
Vium5687g00015 232 Coils Coil 104 126 - -
Vium5687g00015 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 9 89 - -
Vium5687g00015 232 MobiDBLite consensus disorder prediction 98 149 - -
Vium5687g00015 232 CDD RRM2_U1A_like 156 228 - -
Vium5687g00015 232 MobiDBLite consensus disorder prediction 129 149 - -
Vium5687g00015 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Vium5687g00015 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 219 IPR000504 GO:0003723
Vium5687g00015 232 MobiDBLite consensus disorder prediction 98 123 - -
Vium5687g00015 232 FunFam U2 small nuclear ribonucleoprotein B'' 149 232 - -
Vium5687g00015 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 232 IPR000504 GO:0003723
Vium5687g00015 232 SUPERFAMILY RNA-binding domain, RBD 8 219 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5687g00015 Vium-Chr5687 166035 169529 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5687g00015 3 232 Eukaryotic Initiation Factors Gene Family AT1G71770 22.881 2.29e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5687g00015 K11094 - gmx:100805822 401.364