Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium5687g00015 | ATGTTATCAGGGGACATACCTCCAAACCAGACCATTTACATCAAGAATCTCAATGAGAAGGTCAAGAAAGACGAGTTGAAGAGATCTCTGTATTGCTTGTTCTCTCAATATGGAAGGATTTTGGATGTTGTTGCTCTAAAGACACCCAGGCTTCGAGGACAGGCATGGGTTTGTTTCAGTGAAGTCACTGCAGCCAGCAATGCTGTGAGACAAATGCAAAACTTCCCATTTTATGAAAAACCTATGAGAATTCAATATGCAAAAACAAAGTCCGATTGTATTGCAAAAGAAGAGGGTAGTTATGTTCCAAGGGAAAAGAAGAAGAAACAAGAGGAGAAAGCTGAAAGAAAGCGGCGTGCTGAGGAAGCACAACAATCTGCTGCGGCTAATGGCATACATGGTGCTAGTAATGGTGGTCCAACTGCATCATTCCGTCAAGGATCCAGTGCCCAAGAAGCAGCTGCTCCTAATAATATTTTATTCATAGAGAATTTGCCCCATGAAACTACTGGTAGGATGCTTGAAATGCTCTTCGAACAATACCCAGGTTTCAAGGAAGTGCGCTTGATTGAAGCCAAGCCAGGAATTGCATTTGTTGATTTTGAAGATGAGGTGCAATCATCCATGGCCATGCAGGCTCTCAATGGCTTCAAAATCACTCCACTGAATCCCATGAATATAACCTTTGCTAAGAAGTAG | 699 | 0.4235 | MLSGDIPPNQTIYIKNLNEKVKKDELKRSLYCLFSQYGRILDVVALKTPRLRGQAWVCFSEVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSYVPREKKKKQEEKAERKRRAEEAQQSAAANGIHGASNGGPTASFRQGSSAQEAAAPNNILFIENLPHETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALNGFKITPLNPMNITFAKK | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium5687g00015 | 232 | Gene3D | - | 4 | 119 | IPR012677 | - | |
| Vium5687g00015 | 232 | Gene3D | - | 147 | 232 | IPR012677 | - | |
| Vium5687g00015 | 232 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 10 | 89 | IPR000504 | GO:0003723 | |
| Vium5687g00015 | 232 | CDD | RRM1_U1A_like | 11 | 88 | - | - | |
| Vium5687g00015 | 232 | SMART | rrm1_1 | 11 | 85 | IPR000504 | GO:0003723 | |
| Vium5687g00015 | 232 | SMART | rrm1_1 | 159 | 228 | IPR000504 | GO:0003723 | |
| Vium5687g00015 | 232 | FunFam | U1 small nuclear ribonucleoprotein A | 4 | 109 | - | - | |
| Vium5687g00015 | 232 | Coils | Coil | 104 | 126 | - | - | |
| Vium5687g00015 | 232 | PANTHER | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B | 9 | 89 | - | - | |
| Vium5687g00015 | 232 | MobiDBLite | consensus disorder prediction | 98 | 149 | - | - | |
| Vium5687g00015 | 232 | CDD | RRM2_U1A_like | 156 | 228 | - | - | |
| Vium5687g00015 | 232 | MobiDBLite | consensus disorder prediction | 129 | 149 | - | - | |
| Vium5687g00015 | 232 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 12 | 81 | IPR000504 | GO:0003723 | |
| Vium5687g00015 | 232 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 160 | 219 | IPR000504 | GO:0003723 | |
| Vium5687g00015 | 232 | MobiDBLite | consensus disorder prediction | 98 | 123 | - | - | |
| Vium5687g00015 | 232 | FunFam | U2 small nuclear ribonucleoprotein B'' | 149 | 232 | - | - | |
| Vium5687g00015 | 232 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 158 | 232 | IPR000504 | GO:0003723 | |
| Vium5687g00015 | 232 | SUPERFAMILY | RNA-binding domain, RBD | 8 | 219 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium5687g00015 | Vium-Chr5687 | 166035 | 169529 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium5687g00015 | 3 | 232 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 22.881 | 2.29e-09 | 55.1 |