Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5687g00011 ATGGCTTCTTCTACTGGTAGTTTAGACACCTCTGCAAGTGCAAACTCTTTCACCAACTTCACCTTCGCCACGCATCCCTTCATGACCACTTCTTTCTCTGACCTCCTTGCTTCTCCCACAGACAACAACAGGTCTCAGGGTGCTTTGTCTGAAAAAAATGCCTCTGGTGTGCCCAAATTCAAGTCCACTCCACCTCCTTCTTTGCCTCTTTCTCCTCCTCCCATTTCTCCTTCTTCTTACTTTGCTATTCCACCTGGTTTGAGCCCTGCTGAGCTTCTTGACTCTCCGGTTCTCCTCAACTCTTCTAATATACTGCCGTCTCCAACAACTGGAGCATTTGTTTCTCAGAGCTTCAATTGGAAGAGCAGTTCAGGGGGAAACCAGCAAATTGTAAAAGAAGAAGACAAAAACTTCTCAAATTTCTCTTTCCAGACCCAGACGAGGCCTCCTGCTTCATCCACATTAACATATCAATCTTCAAATGTTGCAGTTCAAGCACAAAATCCATGGAATTTTCAGGATGCCACAAAACAAGATAGTTTTTCTTCAGGGAAGAGTATGATGAAAACTGAAAACTCTTCTTCCATGCACAGTTTCCCTCCTGAGATTGCCAGTGTCCAAACTAACCATAGCAATGGGTTTCAATCTGATTTTGGAAATTATCCCCCACAATCTCAGACCTTAAACAGAAAGTCAGATGATGGATACAATTGGAGGAAATATGGCCAAAAACAAGTGAAAGGGAGTGAGAATCCGAGAAGTTATTACAAATGCACATACTCCAATTGCCCTACAAAGAAGAAGGTTGAGAGGTCTTTAGATGGACAAATTACTGAGATAGTTTATAAGGGTACTCATAACCATCCCAAGCCTCAATCCACTAGGAGAAACTCATCATCGTCCTCTTCTCTTCCAATCCTTCCTTCAAATCCCATCAGCAATGAAATCCAAGATCAATCATATGCGACTCATGGTAGTGGACAAATGGATTCCGCCGCCACCCCAGATAACTCATCTATATCAATAGGAGATGATGATTTTGAGCAGAGTTCTCAAAAGTGTAAATCTGGTGGAGATGAATATGATGAAGATGAACCTGATGCAAAAAGATGGAAAATTGAAGGAGAAAATGAGGGTATGTCAGCGCCTGGTAGTAGAACAGTAAGAGAACCTAGAGTTGTGGTACAGACAACCAGTGACATTGATATCTTAGACGATGGCTACAGATGGAGAAAATATGGGCAGAAAGTAGTAAAGGGCAATCCAAATCCAAGGAGTTACTACAAGTGCACACACCCAGGATGTCCAGTGAGAAAGCACGTGGAACGAGCCTCACATGACCTCAGAGCTGTGATCACAACCTATGAGGGAAAGCACAACCATGATGTTCCTGCAGCCCGTGGCAGTGGTAGCCATTCTGTTAACAGACCCCTGCCAAACAATGCTGCAAACCCCACCACAGCAGCCACTGCCATAAGGCCATTGCCAGTGATCCATCATTCTGACAACTCTGTTCAAAGCCAAAGGCCACAAGCACCACCATCAGGGCAATCACCCTTCACCCTAGAGATGTTACAAAGTCCAGGAAATTTTGGATTCTCAAGTTTTGGAAATCCAATGGGTTCTTACGTGAACCACCAACAATTATCTGACAATGTTTTCTCCTCCAGAACCAAGGAGGAGCCCAGAGATGACTTGTTCCTTGAATCTCTCCTATGCTGA 1722 0.4396 MASSTGSLDTSASANSFTNFTFATHPFMTTSFSDLLASPTDNNRSQGALSEKNASGVPKFKSTPPPSLPLSPPPISPSSYFAIPPGLSPAELLDSPVLLNSSNILPSPTTGAFVSQSFNWKSSSGGNQQIVKEEDKNFSNFSFQTQTRPPASSTLTYQSSNVAVQAQNPWNFQDATKQDSFSSGKSMMKTENSSSMHSFPPEIASVQTNHSNGFQSDFGNYPPQSQTLNRKSDDGYNWRKYGQKQVKGSENPRSYYKCTYSNCPTKKKVERSLDGQITEIVYKGTHNHPKPQSTRRNSSSSSSLPILPSNPISNEIQDQSYATHGSGQMDSAATPDNSSISIGDDDFEQSSQKCKSGGDEYDEDEPDAKRWKIEGENEGMSAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSHSVNRPLPNNAANPTTAATAIRPLPVIHHSDNSVQSQRPQAPPSGQSPFTLEMLQSPGNFGFSSFGNPMGSYVNHQQLSDNVFSSRTKEEPRDDLFLESLLC 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5687g00011 573 Gene3D WRKY domain 391 457 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium5687g00011 573 FunFam WRKY transcription factor 223 292 - -
Vium5687g00011 573 MobiDBLite consensus disorder prediction 33 52 - -
Vium5687g00011 573 ProSiteProfiles WRKY domain profile. 233 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium5687g00011 573 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 93 499 IPR044810 GO:0003700
Vium5687g00011 573 MobiDBLite consensus disorder prediction 460 486 - -
Vium5687g00011 573 Gene3D WRKY domain 220 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium5687g00011 573 Pfam WRKY DNA -binding domain 233 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium5687g00011 573 Pfam WRKY DNA -binding domain 405 461 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium5687g00011 573 ProSiteProfiles WRKY domain profile. 399 464 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium5687g00011 573 MobiDBLite consensus disorder prediction 502 521 - -
Vium5687g00011 573 MobiDBLite consensus disorder prediction 348 376 - -
Vium5687g00011 573 SUPERFAMILY WRKY DNA-binding domain 231 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium5687g00011 573 SMART WRKY_cls 404 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium5687g00011 573 SMART WRKY_cls 232 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium5687g00011 573 MobiDBLite consensus disorder prediction 287 347 - -
Vium5687g00011 573 MobiDBLite consensus disorder prediction 33 72 - -
Vium5687g00011 573 SUPERFAMILY WRKY DNA-binding domain 396 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium5687g00011 573 FunFam WRKY transcription factor 33 391 457 - -
Vium5687g00011 573 MobiDBLite consensus disorder prediction 176 237 - -
Vium5687g00011 573 MobiDBLite consensus disorder prediction 176 232 - -
Vium5687g00011 573 MobiDBLite consensus disorder prediction 282 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5687g00011 Vium-Chr5687 117957 121211 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5687g00011 230 572 WRKY Transcription Factor Family AT2G38470 57.022 8.43e-112 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium5687g00011 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5687g00011 K13424 - gmx:100127393 1016.53