Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5687g00006 ATGACGATGTTTTTGTTCTTGATGGGAGTGAAAGTAGATCCACTTTTAGTTTTTAGAACAGGGAAAAAGACTTGGGCCATTGGCTTGTGTTCTTGTCTATTGCCACTCGTCTTTAGCTTATGTCTTGCTTATATTCTAAGGCAATATTTGTCCCCGGATTTAGAAATCTACAAGTCTCTATATATTATGGCGGCTTTCTCATCAACTGGTTCCTTTCAAGCCACTACCAGTGCATTGCAAGATTTTAAGCTCCTAAATTCCGAGGTTGGTCGATTAGCAATCTCTTCATCTATGATAAATGGAGCGCTCAGTTCGTTATGGCAAGGCATTTTACGCACACTGTATTCAAATTCTGTGCAGAAATACACAGACTTATCTTTATCATTGGGTTGCCTCTCTCTGATTTTGATGTTGCTTGTCATCCTGTGTATTTGTCGACCTATCATGTTATGGATGATACGCATGACGCCCAAAGGGGAACCTGTGAAAGAGTCCTACATAGTTTCCATTTATGTTATGGTGTTGGGCTGTTCACTCTTTAGTGAAATCATTGGGGAGCACTACCTGATTGGACCATTGATTCTTGGCCTAGCAGTGCCAGAAGGCCCACCTCTTGGATCAGCATTGGTAGAGAGGCTAGATACCTTGATCTCGGGACTGCTTTTGCCCTTGTTCTTCTTCTCTTCCAGTGCTATGTTCAAGATCGATCTAGTTCATCTCTATGACTTCACTGTTGTGCAACTTTTGGCCATAGCTAACTTCTTTGCCAAGCTTGCAGGAGCCGTGTTGCCCTCACTCTACTGCAAGATACCACTCATTGATGCACTTGCCTTAGGCCTCATCCTCAATTCCCAAGGCATCACACAGTTGCTGAACTTGCAAAGTTTACACTACTTTCATACTTTAGATGATACATCCTACGCGCAAATGCTGATAGCTTTAATATGGTTGACAGCAGCTTCCAACCCCATAGTCAAATTCTTGTATGACCCATCTAAAAGTTACTTGTCTCTAACAAGGTGGAGAACCATTGAGCATTCTCCTCCCGACGTTGAACTTCCGATCATTGCATGCATACACTGTGAGGAAAACACTACATCCATGATCAATTTTCTAGAAATATCTAACTCCAGAGTTGAAAGTCCCATTTACTGCCATGTTCTACACCTGCTTAAACTGAAAGGTAGAACAGCCCCACTTTTGATAGATCATGAACTCAAGTGCAGCAGCAATCTATGGCGCACTAATCATTCATTGAACATAATAAATGCCTTTAAATCATATGAGCAACACAGCAGAAGCGTGAACGTGAAAGTCTACACTTGTATCTCCCATTATGAGACAATGCACGATGAGATATGCATGCAGGCTGCAGAGAAAAGAGCATGCATATTAATTGCACCTTTTCACAAGCACTTTAGAACAACTGGGGTTATAGAATTAGCAAACCCCATTAGAGCATTGAATCGCCATTTGCTGAGAACCGCACCTTGTTCCGTTGGGATCTTAGTTGAACGCGGGAGTTTTGTTAGCAACAACCCTCTAACAACTACATCCTTTTATAATGTTGCAGTTGTATTTATAGAAGGGCCAGATGACCGTGAAGCCTTGGCATATGCAATGCGCATGGCAGATCACCCCAATGTAAAGGTCACTGTAATTAGGATAACGAAAACTCGCAGGAAAAGTAGAACTCCGATGAGAGATCCTGATGCTGAAATAGTTCACAAGTTTATGAGCAGCTACCTCCGAATGAAACGACATGATTTCAAAGAGCAAGTTGTGAGAGATAGTCTTGAAATGGTTGGTGCCATTAAGGAACTCGAAGGTTGCTTTGATTTGATTTTGGTTGGTAGACGCCACGAGAGTGAGTCTTCAATGTTCTATGGAATGAATGAGTGGATTGAGTACCCAGAACTTGGGTCTGTAGCAGACATGTTAGTGTCTTCAGATTCTACCTTTGACGGCTCAGTTTTGGTGGTGCAACAACAAAATAAGGAAGGGTCAAAGGTTGGTTGTCAAGATTATTACAATAAAGAAAATTCTGTCACCAAGAGTGAATTACCAAATGTTTTGGATGTGCATCCTGATACAAAGCTGTGGCCAGTTGTCTAA 2115 0.418 MTMFLFLMGVKVDPLLVFRTGKKTWAIGLCSCLLPLVFSLCLAYILRQYLSPDLEIYKSLYIMAAFSSTGSFQATTSALQDFKLLNSEVGRLAISSSMINGALSSLWQGILRTLYSNSVQKYTDLSLSLGCLSLILMLLVILCICRPIMLWMIRMTPKGEPVKESYIVSIYVMVLGCSLFSEIIGEHYLIGPLILGLAVPEGPPLGSALVERLDTLISGLLLPLFFFSSSAMFKIDLVHLYDFTVVQLLAIANFFAKLAGAVLPSLYCKIPLIDALALGLILNSQGITQLLNLQSLHYFHTLDDTSYAQMLIALIWLTAASNPIVKFLYDPSKSYLSLTRWRTIEHSPPDVELPIIACIHCEENTTSMINFLEISNSRVESPIYCHVLHLLKLKGRTAPLLIDHELKCSSNLWRTNHSLNIINAFKSYEQHSRSVNVKVYTCISHYETMHDEICMQAAEKRACILIAPFHKHFRTTGVIELANPIRALNRHLLRTAPCSVGILVERGSFVSNNPLTTTSFYNVAVVFIEGPDDREALAYAMRMADHPNVKVTVIRITKTRRKSRTPMRDPDAEIVHKFMSSYLRMKRHDFKEQVVRDSLEMVGAIKELEGCFDLILVGRRHESESSMFYGMNEWIEYPELGSVADMLVSSDSTFDGSVLVVQQQNKEGSKVGCQDYYNKENSVTKSELPNVLDVHPDTKLWPVV 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5687g00006 704 CDD USP_Like 522 661 - -
Vium5687g00006 704 Gene3D - 1 334 IPR038770 -
Vium5687g00006 704 Pfam Sodium/hydrogen exchanger family 3 320 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vium5687g00006 704 Gene3D - 397 666 - -
Vium5687g00006 704 PANTHER CATION/H + ANTIPORTER 2 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5687g00006 Vium-Chr5687 66290 68647 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5687g00006 4 663 Antiporter Super Family AT2G13620 35.601 1.58e-125 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5687g00006 K26731 - gmx:100790969 900.582