Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5686g00006 ATGAGACAAGCTGGTGCATATTCAGGGTTACTGTGTGGAGGGGTATCAGGAAGGACAGGACCCCATTCTCTGCCCTTGGCAAGGATCAAGAAGATCATGAAGAAGTCAGGGGATGATGTTAAAATGATATCAGGGGAGGCTCCAATTATCTTCTCCAAGGCTTGTGAGCTCTTCATTGAGGAACTTACTAGAAGGTCCTGGATCATGGCCATCCAAGGCAAAAGGAGGACTCTGCACAAAGAGGATTTGACCTCTGCAGTTATAGCCACTGATCTATTTGACTTTTTGATCACTTTGGTTTCCAATTCTGACAACCATCCACTTGGTGGCACCACCTCTACCATAGAGGTAGAAACTATATATTAG 366 0.4508 MRQAGAYSGLLCGGVSGRTGPHSLPLARIKKIMKKSGDDVKMISGEAPIIFSKACELFIEELTRRSWIMAIQGKRRTLHKEDLTSAVIATDLFDFLITLVSNSDNHPLGGTTSTIEVETIY 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5686g00006 121 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Vium5686g00006 121 Gene3D Histone, subunit A 15 102 IPR009072 GO:0046982
Vium5686g00006 121 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 22 104 - -
Vium5686g00006 121 FunFam Nuclear transcription factor Y subunit C-3 15 101 - -
Vium5686g00006 121 SUPERFAMILY Histone-fold 17 96 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5686g00006 Vium-Chr5686 11120 11485 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5686g00006 22 104 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.241 1.86e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vium5686g00006 CBFD_NFYB_HMF 1.8e-18 CL0012