Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5686g00003 ATGGCAGCTGTTAGGGCTTCCTCTGTAAGACGTATAGGAATCACAATCAATGTTTCTTTCAGTACGGAATTAGTTCAGCACCGTCACTCTCACCATAGTGTGTTCATGAACCTTGCAAGGTTGCCGAGTGACTTACCTAGTCATCCTTATTACAAAAGAGAGTTGCAGTCTGCTAAGAATCAATTCTCTAGCTATTGTTTTCGGAGTGCCCTTCCTTTTGCTTCTGCGAGCCACGTGTTGAATCGCCGATTTTATTCGTCGACGGTGGGTGGTGATAAAGGAAGTAGAGATGCTGGTACAGAAGTCTCTGCCGGTTCTGGTGCGAGTGACATGAATACCACTGGTGATTCTGTTGCTGGGGGTGATTGGGCTGAGAGGATTAGAGATGTTTGTAAGAGTGTGGGAGAGTCAGCATCATATGCTGGGGAAAAGGTTAAAGCAGCATCCGATGATCTCAGTCCATATGCTCAGCAGTTGCTTGATTCACACCCATATTTAGGCAAGGTGGTTATTCCGGTTGGTGGTACTTTAACTGCTACGCTAATAGCTTGGTTCTTGATGCCTGTGATTTTGAGGAAATTTCACAGATATGCAATGCAAGGTCCCGTTTCTCTATTGCCAGGAAGCATGTCTGGAGATCCAGTTCCTTACGAGAAAAGCTTCTGGGGTGCTATGGAGGATCCTGTGCGATATTTAGTTACCTTTATGGCATTCTCACAAATTGGTGTAATGGTAGCTCCAACAACTATAACCGCAGAATATCTTGCACCAGTTTGGAGGGGTGCAGTCATAGTTTCATTTGTATGGTTTTTGCATAGATGGAAAACAAATGTTTTTGCACGGACATTGTCCAGTCAAAGTTTACTTGGACTTGATAGGGACAAAGTGCTCGCTCTTGACAAAATCTCATCAATTGGTCTATTTGTGATTGGTATAATGGCTTTTGCTGAGGCTTGTGGTGTGGCCGTGCAATCTATTGTTACTGTTGGTGGTATAGGAGGAGTGGCTACTGCTTTTGCTGCCAAGGACATTCTTGGCAACGTGTTTAGTGGTTTATCTATGCAGTTTTCTAAGCCTTTTTCAGTTGGAGATACAATAAAAGCAGGCTCGATAGAGGGTCAAGTGGTGGAAATGGGTCTTACTACTACATCTTTGCTGAGTTCAGAGAAGTTTCCGGTCATTGTTCCAAACTCATTTTTTTCTAGCCAGGTTATTGTGAATAAGTCCCGTGCTGAATATCGTGCCATTATTAGCAAAATTCCTCTGCAAAGTGAGGATATAAGTAAGATTCCCCAGATATCAGATGATGTAAAAAGCATGCTCAGGTCAAATGCAAAGGTTTTCTTAGGGAAAGATGTTCCCTACTGTTTCTTATCCCGTATAGAAAGTTCATATGCAGAATTGACTCTTGGATACAACCTCAAACATATGCGCAAAGATGAACTATACTCTGCTGAACAAGAAATTCTGCTTCTGGCAGTTCAGATCATTAAAAATCACGGGGTTGCTCTCGGCAGCACATGGCAAGAAATGCCTTCTAAATGA 1545 0.4285 MAAVRASSVRRIGITINVSFSTELVQHRHSHHSVFMNLARLPSDLPSHPYYKRELQSAKNQFSSYCFRSALPFASASHVLNRRFYSSTVGGDKGSRDAGTEVSAGSGASDMNTTGDSVAGGDWAERIRDVCKSVGESASYAGEKVKAASDDLSPYAQQLLDSHPYLGKVVIPVGGTLTATLIAWFLMPVILRKFHRYAMQGPVSLLPGSMSGDPVPYEKSFWGAMEDPVRYLVTFMAFSQIGVMVAPTTITAEYLAPVWRGAVIVSFVWFLHRWKTNVFARTLSSQSLLGLDRDKVLALDKISSIGLFVIGIMAFAEACGVAVQSIVTVGGIGGVATAFAAKDILGNVFSGLSMQFSKPFSVGDTIKAGSIEGQVVEMGLTTTSLLSSEKFPVIVPNSFFSSQVIVNKSRAEYRAIISKIPLQSEDISKIPQISDDVKSMLRSNAKVFLGKDVPYCFLSRIESSYAELTLGYNLKHMRKDELYSAEQEILLLAVQIIKNHGVALGSTWQEMPSK 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5686g00003 514 Gene3D - 359 407 IPR023408 -
Vium5686g00003 514 SUPERFAMILY Sm-like ribonucleoproteins 343 408 IPR010920 -
Vium5686g00003 514 MobiDBLite consensus disorder prediction 89 120 - -
Vium5686g00003 514 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 256 342 IPR011014 GO:0016020
Vium5686g00003 514 Gene3D - 254 358 - -
Vium5686g00003 514 Pfam Mechanosensitive ion channel 301 503 IPR006685 GO:0016020|GO:0055085
Vium5686g00003 514 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 123 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5686g00003 Vium-Chr5686 3186 8165 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5686g00003 123 510 Mechanosensitive Ion Channel Family AT4G00290 66.495 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5686g00003 K22047 - gmx:100789047 853.973