Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5686g00002 ATGGCAGCTGTTAGGGCTTCCTCTGTAAGACGTATAGGAATCACAATCAATGTTTCTTTCAGTACGGAATTAGTTCAGCACCGTCACTCTCACCATAGTGTGTTCATGAACCTTGCAAGGTTGCCGAGTGACTTACCTAGTCATCCTTATTACAAAAGAGAGTTGCAGTCTGCTAAGAATCAGTTTAGTAACTTGGCTTCTGAATCCTTTGGAAGTAGACACCAATTTGGTACTAGATCCAATGTATCGTATAATCCTAGATTCTCTAGCTATTGTTTTCGGAGTGCCCTTCCTTTTGCTTCTGCGAGCCACGTGTTGAATCGCCGATTTTATTCGTCGACGGTGGGTGGTGATAAAGGAAGTAGAGATGCTGGTACAGAAGTCTCTGCCGGTTCTGGTGCGAGTGACATGAATACCACTGGTGATTCTGTTGCTGGGGGTGATTGGGCTGAGAGGATTAGAGATGTTTGTAAGAGTGTGGGAGAGTCAGCATCATATGCTGGGGAAAAGGTTAAAGCAGCATCCGATGATCTCAGTCCATATGCTCAGCAGTTGCTTGATTCACACCCATATTTAGGCAAGGTGGTTATTCCGGTTGGTGGTACTTTAACTGCTACGCTAATAGCTTGGTTCTTGATGCCTGTGATTTTGAGGAAATTTCACAGATATGCAATGCAAGGTCCCGTTTCTCTATTGCCAGGAAGCATGTCTGGAGATCCAGTTCCTTACGAGAAAAGCTTCTGGGGTGCTATGGAGGATCCTGTGCGATATTTAGTTACCTTTATGGCATTCTCACAAATTGGTGTAATGGTAGCTCCAACAACTATAACCGCAGAATATCTTGCACCAGTTTGGAGGGGTGCAGTCATAGTTTCATTTGTATGGTTTTTGCATAGATGGAAAACAAATGTTTTTGCACGGACATTGTCCAGTCAAAGTTTACTTGGACTTGATAGGGACAAAGTGCTCGCTCTTGACAAAATCTCATCAATTGGTCTATTTGTGATTGGTATAATGGCTTTTGCTGAGGCTTGTGGTGTGGCCGTGCAATCTATTGTTACTGTTGGTGGTATAGGAGGAGTGGCTACTGCTTTTGCTGCCAAGGACATTCTTGGCAACGTGTTTAGTGGTTTATCTATGCAGTTTTCTAAGCCTTTTTCAGTTGGAGATACAATAAAAGCAGGCTCGATAGAGGGTCAAGTGGTGGAAATGGGTCTTACTACTACATCTTTGCTGAGTTCAGAGAAGTTTCCGGTCATTGTTCCAAACTCATTTTTTTCTAGCCAGGTTATTGTGAATAAGTCCCGTGCTGAATATCGTGCCATTATTAGCAAAATTCCTCTGCAAAGTGAGGATATAAGTAAGATTCCCCAGATATCAGATGATGTAAAAAGCATGCTCAGGTCAAATGCAAAGGTTTTCTTAGGGAAAGATGTTCCCTACTGTTTCTTATCCCGTATAGAAAGTTCATATGCAGAATTGACTCTTGGATACAACCTCAAACATATGCGCAAAGATGAACTATACTCTGCTGAACAAGAAATTCTGCTTCTGGCAGTTCAGATCATTAAAAATCACGGGGTTGCTCTCGGCAGCACATGGCAAGAAATGCCTTCTAAATGA 1623 0.4258 MAAVRASSVRRIGITINVSFSTELVQHRHSHHSVFMNLARLPSDLPSHPYYKRELQSAKNQFSNLASESFGSRHQFGTRSNVSYNPRFSSYCFRSALPFASASHVLNRRFYSSTVGGDKGSRDAGTEVSAGSGASDMNTTGDSVAGGDWAERIRDVCKSVGESASYAGEKVKAASDDLSPYAQQLLDSHPYLGKVVIPVGGTLTATLIAWFLMPVILRKFHRYAMQGPVSLLPGSMSGDPVPYEKSFWGAMEDPVRYLVTFMAFSQIGVMVAPTTITAEYLAPVWRGAVIVSFVWFLHRWKTNVFARTLSSQSLLGLDRDKVLALDKISSIGLFVIGIMAFAEACGVAVQSIVTVGGIGGVATAFAAKDILGNVFSGLSMQFSKPFSVGDTIKAGSIEGQVVEMGLTTTSLLSSEKFPVIVPNSFFSSQVIVNKSRAEYRAIISKIPLQSEDISKIPQISDDVKSMLRSNAKVFLGKDVPYCFLSRIESSYAELTLGYNLKHMRKDELYSAEQEILLLAVQIIKNHGVALGSTWQEMPSK 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5686g00002 540 SUPERFAMILY Sm-like ribonucleoproteins 369 434 IPR010920 -
Vium5686g00002 540 Gene3D - 280 384 - -
Vium5686g00002 540 Gene3D - 385 433 IPR023408 -
Vium5686g00002 540 Pfam Mechanosensitive ion channel 327 529 IPR006685 GO:0016020|GO:0055085
Vium5686g00002 540 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 149 533 - -
Vium5686g00002 540 MobiDBLite consensus disorder prediction 115 146 - -
Vium5686g00002 540 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 282 368 IPR011014 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5686g00002 Vium-Chr5686 3186 8249 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5686g00002 149 536 Mechanosensitive Ion Channel Family AT4G00290 66.495 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5686g00002 K22047 - gmx:100789047 902.894