Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5681g00003 ATGGCACGGATCTTCCTTAACACTCTTTCTCTGCTGCTCCTGCTTCTTGCTCCTTCCGAGGCTGATCAAATAAATTCATACCAACCGGCATCTAATTTTGAAACTCACGTTCCTTTTCTGGGCCGCCATGAAGATTCCAACACTGAACTAACAGGTGATTCAGCCGAGGACAGAAAACGCTTCAATGATCGAACACCCTACACAATGTCTCAAAATGCTTTCCACGCTCCCGGCAAACTCACTGAAGGATTCTACGACCAAACTTGCCCCGATGCAGAAAACATCATCACCAAAGCTTTCCTCCAGATCGTTGAGCAGAATCCAGGCGCTATCGGTCACATCCTTCGCCTTCAGTTCCATGACTGCTTCGTCAATGGATGCGATGCATCGATATTGTTAGATTATACACCATCGGGTGACCTGGTTGAGAAAGGTTCGATGTTCAATGGTCTACTCCTGAAAGGGGCTGACATAATAGATGACATAAAGGCAAAGCTGGAGAACAAGTGTCCTGGAACCGTGTCATGTGCAGACGTATTGGCATTTACAAACAACGCAGCAATGACAATGGCGGGTTTACCTGCTCAGAGGCCCCTTGGAGGTCGCAGAGACTCTATCGTTTCCCTTGCAAGCGTTGTAGAATCCGACAATCTTCCTATGTCAGATTGGAACATCGACCAAATGATGGAACTGTTTGGCAGGAAAGGGTTCAACATAGAAGAAATGGTGGTGATGATTGGTGCACATTCTGTTGGGATTTCTCATTGCGACTTCTTCATGCAGAGGGCCTTAAACTTCAGTGGGACTGGGATCCCTGACCCTAACCTGGGTGTGGAGGCGATTGATGAAATAAAAAAAGCATGTCCTAACCCTGGCACAACCCTGTATAGGAACCCCCCTGTGAACTTTGATGCCACACCAACTGTTCTTGATAACCTCTTCTTCAAGGACATGGTGGAGAGAAGGAGAACTTTGCTCATTACCGATTCACATCTGTATGAAGATCCCAGAACTAGGCCAATCGTCGAACAGATGGCAGCTGACCCTACCTTGTTCCCCAAGAGATTTCCTGAGGTCATGGTCAAACTCACTTCTTTGAATGTGCTCACAGGGAATGAAGGGGAGGTGAGGAAGATTTGTAGATCCACCAATTAA 1155 0.4693 MARIFLNTLSLLLLLLAPSEADQINSYQPASNFETHVPFLGRHEDSNTELTGDSAEDRKRFNDRTPYTMSQNAFHAPGKLTEGFYDQTCPDAENIITKAFLQIVEQNPGAIGHILRLQFHDCFVNGCDASILLDYTPSGDLVEKGSMFNGLLLKGADIIDDIKAKLENKCPGTVSCADVLAFTNNAAMTMAGLPAQRPLGGRRDSIVSLASVVESDNLPMSDWNIDQMMELFGRKGFNIEEMVVMIGAHSVGISHCDFFMQRALNFSGTGIPDPNLGVEAIDEIKKACPNPGTTLYRNPPVNFDATPTVLDNLFFKDMVERRRTLLITDSHLYEDPRTRPIVEQMAADPTLFPKRFPEVMVKLTSLNVLTGNEGEVRKICRSTN 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5681g00003 384 ProSitePatterns Peroxidases proximal heme-ligand signature. 241 251 IPR019793 -
Vium5681g00003 384 Pfam Peroxidase 102 348 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium5681g00003 384 ProSiteProfiles Plant heme peroxidase family profile. 79 384 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium5681g00003 384 FunFam Peroxidase 83 231 - -
Vium5681g00003 384 Gene3D Peroxidase, domain 2 219 363 - -
Vium5681g00003 384 FunFam Peroxidase 219 363 - -
Vium5681g00003 384 CDD secretory_peroxidase 79 383 IPR033905 GO:0004601|GO:0042744
Vium5681g00003 384 SUPERFAMILY Heme-dependent peroxidases 80 384 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium5681g00003 384 PRINTS Haem peroxidase superfamily signature 174 191 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium5681g00003 384 PRINTS Haem peroxidase superfamily signature 192 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium5681g00003 384 PRINTS Haem peroxidase superfamily signature 111 125 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium5681g00003 384 PRINTS Haem peroxidase superfamily signature 303 318 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium5681g00003 384 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium5681g00003 384 Gene3D - 84 384 - -
Vium5681g00003 384 PRINTS Plant peroxidase signature 240 252 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5681g00003 384 PRINTS Plant peroxidase signature 318 335 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5681g00003 384 PRINTS Plant peroxidase signature 173 183 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5681g00003 384 PRINTS Plant peroxidase signature 113 133 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5681g00003 384 PRINTS Plant peroxidase signature 154 167 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5681g00003 384 PRINTS Plant peroxidase signature 358 371 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5681g00003 384 PRINTS Plant peroxidase signature 192 207 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5681g00003 384 PRINTS Plant peroxidase signature 89 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5681g00003 384 PANTHER - 75 384 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5681g00003 Vium-Chr5681 4995 6884 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5681g00003 76 384 Peroxidase AT3G03670 38.907 8.31e-68 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5681g00003 K00430 - gmx:100802856 494.197