Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5681g00001 ATGTTCAATGGTCTACTCCTGAAAGGGGCTGACATAATAGATGACATAAAGGCAAAGCTGGAGAACAAGTGTCCTGGAACCGTGTCATGTGCAGACGTATTGGCATTTACAAACAACGCAGCAATGACAATGGCGGGTTTACCTGCTCAGAGGCCCCTTGGAGGTCGCAGAGACTCTATCGTTTCCCTTGCAAGCGTTGTAGAATCCGACAATCTTCCTATGTCAGATTGGAACATCGACCAAATGATGGAACTGTTTGGCAGGAAAGGGTTCAACATAGAAGAAATGGTGGTGATGATTGGTGCACATTCTGTTGGGATTTCTCATTGCGACTTCTTCATGCAGAGGGCCTTAAACTTCAGTGGGACTGGGATCCCTGACCCTAACCTGGGTGTGGAGGCGATTGATGAAATAAAAAAAGCATGTCCTAACCCTGGCACAACCCTGTATAGGAACCCCCCTGTGAACTTTGATGCCACACCAACTGTTCTTGATAACCTCTTCTTCAAGGACATGGTGGAGAGAAGGAGAACTTTGCTCATTACCGATTCACATCTGTATGAAGATCCCAGAACTAGGCCAATCGTCGAACAGATGGCAGCTGACCCTACCTTGTTCCCCAAGAGATTTCCTGAGGTCATGGTCAAACTCACTTCTTTGAATGTGCTCACAGGGAATGAAGGGGAGGTGAGGAAGATTTGTAGATCCACCAATTAA 717 0.4672 MFNGLLLKGADIIDDIKAKLENKCPGTVSCADVLAFTNNAAMTMAGLPAQRPLGGRRDSIVSLASVVESDNLPMSDWNIDQMMELFGRKGFNIEEMVVMIGAHSVGISHCDFFMQRALNFSGTGIPDPNLGVEAIDEIKKACPNPGTTLYRNPPVNFDATPTVLDNLFFKDMVERRRTLLITDSHLYEDPRTRPIVEQMAADPTLFPKRFPEVMVKLTSLNVLTGNEGEVRKICRSTN 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5681g00001 238 ProSitePatterns Peroxidases proximal heme-ligand signature. 95 105 IPR019793 -
Vium5681g00001 238 PRINTS Plant peroxidase signature 27 37 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5681g00001 238 PRINTS Plant peroxidase signature 94 106 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5681g00001 238 PRINTS Plant peroxidase signature 172 189 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5681g00001 238 PRINTS Plant peroxidase signature 8 21 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5681g00001 238 PRINTS Plant peroxidase signature 212 225 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5681g00001 238 PRINTS Plant peroxidase signature 46 61 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5681g00001 238 FunFam Peroxidase 73 217 - -
Vium5681g00001 238 PRINTS Haem peroxidase superfamily signature 46 58 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium5681g00001 238 PRINTS Haem peroxidase superfamily signature 28 45 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium5681g00001 238 PRINTS Haem peroxidase superfamily signature 95 110 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium5681g00001 238 PRINTS Haem peroxidase superfamily signature 157 172 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium5681g00001 238 Gene3D Peroxidase, domain 2 73 217 - -
Vium5681g00001 238 PANTHER - 7 238 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium5681g00001 238 SUPERFAMILY Heme-dependent peroxidases 6 238 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium5681g00001 238 Pfam Peroxidase 7 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium5681g00001 238 Gene3D - 6 238 - -
Vium5681g00001 238 ProSiteProfiles Plant heme peroxidase family profile. 1 238 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5681g00001 Vium-Chr5681 252 1247 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5681g00001 7 238 Peroxidase AT3G03670 38.462 1.32e-49 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5681g00001 K00430 - gmx:100802856 367.081