Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5676g00003 ATGGAAGCCGTGGAAGTCATCACCACCACCACAATCAAGGCACCTACTCATAGTATCCATAACTCACCTCGTAAAATCCATTTAACTCCATTTGATCTTCCATTTCTCACCGTTGAATCCATCCAAAAAGGTCTTCTTTTTGGCAGCCCAAAAGACACAGCATTCCAAATAAATAATCTTCAACGTTCACTTTCCTCCACCCTTGCCTTCTTTCCTCCCATCACTGGTCGTCTCGTCATACTCCAACATCACGACAACATTGTCTCAACCCACATCCTTTGCAACAACGCCGGAGTCCTCTTTGTCCACGCCGTTGCACCCAACACCACTGTCGCTCACATCCTTCAACCCAAATACAACCCTCCCATCATTCGCTCCTTCTTTCCACTCAACGGCGTTAAAAACTACAAGGGCACTTCACAGCCATTGCTGGCAGTGCAGGTGACGGAGCTAGTTGACGGCATCTTCATCGCCCTAACAATCAACCATGTCGTTGCTGACGGCAACTCGCTGTGGCATTTCGTGAATTCCTGGGCTGAAATCTCACGTGGCTCCCTTAAAATATCCAAACTCCCTTCTCTCCACCGTTACTTTCCCGATGGCATTGAACACCCCATGCGCTTTCCCTTCACAGAGGAGGAAGAAATCCGACACTCCCCAAACCTCAAACAACAAATTCCTCCTGAGAGGGTCTTCCATTTCGGGAAGGAAAAAATCGCGGAACTGAAAAGAAAAGCCAACGCAGAAGCCAACACAGACAAAATATCTTCTCTGCAAGCGCTTTTAACTCTACTTTGGCTCTGTGTGATTCGTTGCCGACACGTAGAGCCTGAAGAAGAGATAAGTTACGTGCTTGCGATTGGCGTTGGGCCCAGGATGGTTCCACCATTGGCAGAGGGTTATTTTGGAAACTCAGTGATGTTTGGTGTTGTGACCATGAAAGCCGGGGAACTATTGGAGGGTGGTCTTGGGAAGGGTGCTCTGGACATGAACAAGATGATTGCTTTGCACTCTCATGAGAGGTTAAAGAACCACTATGAGTCTTGGGTGAGAACTCCGAGGCTGCTTAAATTGTTTGGTGGTTCACTGGCCACTAGCAGTTCTCCGAGGTTCGACTTTTACGGTAACGATTTTGGGTGGGGAAAGCCCGTGGCGGTAAGAAGTGGTGGTGCAAATAAGGGTTGCGGAAAGATTAGTGTGTATGCAGGCGCTGAAGAAGGTTCTATCGACATTGAAGTGTGCCTTCCTTTTGAGATTTTGGAGGCAATGGAAAATGACCCCGACTTCATGGATGCCGTTTTCAGCTAG 1308 0.4809 MEAVEVITTTTIKAPTHSIHNSPRKIHLTPFDLPFLTVESIQKGLLFGSPKDTAFQINNLQRSLSSTLAFFPPITGRLVILQHHDNIVSTHILCNNAGVLFVHAVAPNTTVAHILQPKYNPPIIRSFFPLNGVKNYKGTSQPLLAVQVTELVDGIFIALTINHVVADGNSLWHFVNSWAEISRGSLKISKLPSLHRYFPDGIEHPMRFPFTEEEEIRHSPNLKQQIPPERVFHFGKEKIAELKRKANAEANTDKISSLQALLTLLWLCVIRCRHVEPEEEISYVLAIGVGPRMVPPLAEGYFGNSVMFGVVTMKAGELLEGGLGKGALDMNKMIALHSHERLKNHYESWVRTPRLLKLFGGSLATSSSPRFDFYGNDFGWGKPVAVRSGGANKGCGKISVYAGAEEGSIDIEVCLPFEILEAMENDPDFMDAVFS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5676g00003 435 Gene3D - 223 425 IPR023213 -
Vium5676g00003 435 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 430 - -
Vium5676g00003 435 Pfam Transferase family 4 429 - -
Vium5676g00003 435 Gene3D - 2 206 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5676g00003 Vium-Chr5676 23267 24886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5676g00003 55 425 Monolignol Biosynthesis Gene Families AT5G48930 26.667 4.03e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5676g00003 - - gmx:100797643 597.045