Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5676g00002 ATGGAAAACGTTCGAGTCATCTCCACCACCACAATCAAAGCAACCGTTCCCAATAACGCTAACTCACCTCATACAGTAGATTTAACTCCCTGGGATCTCCAATTCCTCCCTACTGAAACCATCCAAAAAGGCCTTCTTTTTCGCAACGTAAAAAATACACCATTCCAAATCCACCACCTCCAACACTCCCTTTCCTCCACTCTAGCATTCTTTCCACCCCTCGCAGGTCGTCTCGCCATACTCCGACATCATCACAGCATTGTCTCATCCCACATCCTATGCAACAACGCCGGAGCACTCTTTGTCCACGCCGTTGCACCCAACACCACTGTTGCACACATCCTTCAACCAAAATACGTTCCTCTCATTGTTTCCTCCTTCTTTTCAATCAACGGAGTTAAAAACTACGAGGGCACGTCGCAGCCATTGCTGGCAGTGCAAGTGACGGAGCTAGTTGACGGCATCTTCATCGCCCTAACAGTAAACCACGTCGTTGCTGACGGCAAGTCATTGTGGCATTTCGTGAATTCCTGGGCTGAAATCTCACGTGGCTCCCTTCATATATCCAAACTTCCTTCTCTCCGCCGTTACTTCCCCGATGGCATTGACCACCCCATACACTTTCCCTTCACAGAGGAAGAAGAAAACCAACACTCCCCAAACCTCAAACCACAAGCTCCACGTGAGAGGGTATTCCATTTCACGAAGGAAAAAATTGCCGAACTCAAATCAAAAGCTAATGCAGAGGCCGACACAGACAAAATATCTTCTCTGCAAGCGCTTCTAACTCTTCTTTGGCGCGCTGTGACACGTTGCAAGCGGGTGGAGCCGCAAGAAAACGTGCATTATGTGTTGTTCATTGGCGTTTGGTCGAGGATGGTTCCAGCACTGGCAGAGGGTTATTTTGGAAACTCAGTTATAGCCACTATTGTGACCATGAAATGTGGGGAACTATTGGAGGGTGGGCTTGGAAAGGGGGCTTTAGAGATGAACAAGATGATTTCTTTGCAGTCTGGTGAGAAGGTAAAGAAGCAGTATGAATCTTGGGTGAGAAGGCCAAGGCTTTTAACGTTGCCGAGTGGCGTGGGTGGTAGTAATTACTTGATCACTAGCAGTTCTCCAAGGTTTAAGATATTAGATAACGATTTTGGTTGGGGAAAGGCCGAAGCAGTTCGCATTGGAGGTGGGCAACATAAACGTAACGGCATGATTACTGTGTTCGGCGGAGCTGAAGAAGGGTCCATTGACATTGTAGCCACCCTTCCTTATTTCATTCATGAGGCCATGGGAAATGACGCAGAGTTCATGGATGTTGTGTCCCACTAA 1326 0.4774 MENVRVISTTTIKATVPNNANSPHTVDLTPWDLQFLPTETIQKGLLFRNVKNTPFQIHHLQHSLSSTLAFFPPLAGRLAILRHHHSIVSSHILCNNAGALFVHAVAPNTTVAHILQPKYVPLIVSSFFSINGVKNYEGTSQPLLAVQVTELVDGIFIALTVNHVVADGKSLWHFVNSWAEISRGSLHISKLPSLRRYFPDGIDHPIHFPFTEEEENQHSPNLKPQAPRERVFHFTKEKIAELKSKANAEADTDKISSLQALLTLLWRAVTRCKRVEPQENVHYVLFIGVWSRMVPALAEGYFGNSVIATIVTMKCGELLEGGLGKGALEMNKMISLQSGEKVKKQYESWVRRPRLLTLPSGVGGSNYLITSSSPRFKILDNDFGWGKAEAVRIGGGQHKRNGMITVFGGAEEGSIDIVATLPYFIHEAMGNDAEFMDVVSH 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5676g00002 441 Gene3D - 209 426 IPR023213 -
Vium5676g00002 441 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 6 436 - -
Vium5676g00002 441 Pfam Transferase family 4 423 - -
Vium5676g00002 441 Gene3D - 2 205 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5676g00002 Vium-Chr5676 14436 15848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5676g00002 55 395 Monolignol Biosynthesis Gene Families AT5G48930 27.500 5.65e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5676g00002 - - gmx:100797643 598.201