Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5674g00001 ATGAATTCAATGGCGGCAGTACAAGCCACACTCTTTGCCCTTTGTGTTGAAAAAGATTGGAATCAATGGAAGTTGCCTTCAGCTATTAGGATTTTGGCGACACTCTATTCGGGAATTGCAGTCACTACATTCGTTAATATTGTCACTTCGTGGTGTGTACGGAAGAAAGGTCCATTATATGCATCTGTATTCAATCCCCTTACCCTTGTGCTCGTGGCTATCACCGCTCCACTCTTATTACAAGAGAAACTATACCTTGGAAGTGTACTTGGCGCAGCGCTAATTGTGTGTGGCTTGTACATGGTGCTGTGGAGTAAAAGCAAAGAAATGAAACAACAAACTGATTTGGTGTCATCAGAGACAGAATTAATTAGTACGACTGAGGTTGTTGTAGTGTCCACCACCAATAAGAATGAGTTAGCAAAAACAGGTGAATAG 438 0.4178 MNSMAAVQATLFALCVEKDWNQWKLPSAIRILATLYSGIAVTTFVNIVTSWCVRKKGPLYASVFNPLTLVLVAITAPLLLQEKLYLGSVLGAALIVCGLYMVLWSKSKEMKQQTDLVSSETELISTTEVVVVSTTNKNELAKTGE 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5674g00001 145 PANTHER WAT1-RELATED PROTEIN 1 115 IPR030184 GO:0016020|GO:0022857
Vium5674g00001 145 SUPERFAMILY Multidrug resistance efflux transporter EmrE 23 108 - -
Vium5674g00001 145 Pfam EamA-like transporter family 11 103 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5674g00001 Vium-Chr5674 2279 3247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5674g00001 1 114 Nodulin-like Gene Family AT1G25270 44.737 4.38e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5674g00001 - - var:108326681 250.751