Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium566g00008 ATGACCGAACAGAGCAAGACATTTGGATGGGCAGCAAGGGACACTTCTGGCATTCTCTCCCCTTTCAATTTCTCCAGAAGGGCAACAGGAGAGAAAGATGTTGCAATTAAAGTAATGTACTGTGGAATATGTCACTCAGACTTACATATGTTAAAGAATGAGTGGAACTGTTCAATCTATCCTATTGTTCCTGGACACGAGATTGCTGGTGTGGTGACAGAGGTGGGAAGCAAGGTGCAAAAGTTCAAAGTTGGAGACAGAGTTGGTGTGGGGTGCATGGTTGGATCCTGTAGCTCCTGTCAGAACTGTAGTGAAGATCATGAGAATTACTGCCCCAAAATGATTCTCACATACAGTGCCAAGTATGTTGATGGCACCATAACATACGGAGGCTACTCCGATTCAATGGTTTCAGATGAACACTTTGTGGTTCGTATTCCAGATAACATACCTCTTGATGTTGCTGCTCCTCTTCTTTGTGCTGGAATCACAGTGTATAGCCCTCTCAAATATTATGAACTTGATAAGCCTGGACTTCATATTGGTGTGGTTGGTCTTGGTGGACTTGGTCACATGGCCGTCAAGTTTGCCAAAGCTCTTGGACTTAAGGTCACAGTAATTAGTACCTCTCCCAACAAAAAGAAGGAAGCCATCGAACACATGGGAGCTGATGCATTTGTTGTTAGCCGTGAACAAGATGAGATGATGGCTGTAATGGGAACCTTTGATGGAATCATTGACACAGTTTCTGCAAACCATTCTCTCGTGCCTTTGATTGGCCTGTTGAAGACTCATGGTAAATTAATCATGGTTGGTGCTCCAGAGAAACCTCTTGAGGTTCCAGCATTTTCCTTACTTACGGGGAGGAAGCTGGTTGGTGGCAGTGCAATTGGAGGGATGAAAGAGACGCAAGAAATGATAGATTTTGCTGCGAAGCATGATGTGAAACCTGATATCGAAGTTATTGAAATGGATTATGTGAACACTGCGATGGAACGCCTCCTTAAAGCAGATGTGAAGTATCGATTTGTTATTGATATTGGAAAAACGTTGAAGCCAAGTTCCTGA 1068 0.4354 MTEQSKTFGWAARDTSGILSPFNFSRRATGEKDVAIKVMYCGICHSDLHMLKNEWNCSIYPIVPGHEIAGVVTEVGSKVQKFKVGDRVGVGCMVGSCSSCQNCSEDHENYCPKMILTYSAKYVDGTITYGGYSDSMVSDEHFVVRIPDNIPLDVAAPLLCAGITVYSPLKYYELDKPGLHIGVVGLGGLGHMAVKFAKALGLKVTVISTSPNKKKEAIEHMGADAFVVSREQDEMMAVMGTFDGIIDTVSANHSLVPLIGLLKTHGKLIMVGAPEKPLEVPAFSLLTGRKLVGGSAIGGMKETQEMIDFAAKHDVKPDIEVIEMDYVNTAMERLLKADVKYRFVIDIGKTLKPSS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium566g00008 355 SUPERFAMILY GroES-like 15 178 IPR011032 -
Vium566g00008 355 Pfam Zinc-binding dehydrogenase 188 311 IPR013149 -
Vium566g00008 355 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 151 316 IPR036291 -
Vium566g00008 355 SMART PKS_ER_names_mod 17 345 IPR020843 GO:0016491
Vium566g00008 355 FunFam Uncharacterized protein 10 160 - -
Vium566g00008 355 PANTHER ALDEHYDE REDUCTASE 4 350 IPR047109 GO:0016616
Vium566g00008 355 Gene3D - 10 347 - -
Vium566g00008 355 FunFam Cinnamyl alcohol dehydrogenase 161 317 - -
Vium566g00008 355 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 65 79 IPR002328 GO:0008270|GO:0016491
Vium566g00008 355 CDD CAD1 8 346 IPR047109 GO:0016616
Vium566g00008 355 Gene3D - 161 317 - -
Vium566g00008 355 FunFam Putative cinnamyl alcohol dehydrogenase 6 318 347 - -
Vium566g00008 355 Pfam Alcohol dehydrogenase GroES-like domain 32 145 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium566g00008 Vium-Chr566 78456 83120 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium566g00008 4 354 Monolignol Biosynthesis Gene Families AT4G37990 70.370 1.20e-171 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium566g00008 K23232 - gmx:100809071 603.208