Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium566g00007 ATGTCGAACGTGTTAGCAGGCAGTGAAAAGGGAGAAGTTTCTGCATATGGGTGGGCAGCTAGAGACGATTCGGGAATTCTCTCCCCATTCCACTTTACAAGAAGGGCAAACGGTGATAATGATATCACACTCGAAATACTCTACTGTGGGATTTGCCACACGGACCTCCACTTCGCGAGGAACGACTTTGGGATGTCGATCTATCCAATGGTTCCTGGGCATGAGATTGTGGGTAAAGTGACAAAGGTGGGTAGCAAAGTCACAAAATTCAGTGTTGGAGACATAGCTGGTGTGGGTGGCTCTGTGGGTTCGTGCGGCTCGTGTTCGGAGTGCAGCGAGGGATTCTATGTGTATTGTCCAAAGATGATTTTAACCTACAGTGCACGCTGCCATGATGGAACAGTAACCCAAGGTGGATACTCTGATAATCTGGTGGTTGATCAGAACTTTGCGGTGCTAATCCCGAAGTCCATGCCACTGGCTAGTACAGCCCCCTTGTTGTGTGCTGGAATCACAGTCTACAGCCCGTTGAAGTATCACGGGCTTACTCAGCCCGGGTTGCACTTGGGTGTGGTGGGCCTGGGAGGCCTAGGTCACGTGGCTGTGAAGTTTGCCAAGGCTTTTGGCATGCGTGTCACTGTGATAAGTACATCTCCCAGCAAGAAAAAGGAAGCATTGGAGAGGTTTGGTGCAGATGCATTCTTGGTTAGTCGAGACCAACAACAGTTGCAGGATGCCGTGGGAACCATGGACGCCATTATTGACACTGTTTCAGCTAATCACTCCATCCAACCACTGATTGGTTTATTGAAAACAAGAGGAAAGTTGATTTTGTTGGGTGGACCAGCCAAACCTCTTGAGGTTTTAGCTATGCCTTTGCTTTTGGGGAGAAAGATGATTGCTGGAAGTGCAGGAGGTGGGAGAGAAGAGATTCAAGAGATGATTAATTTTGCAGCAAAACACAATATTACAGCAGATGTGGAAGTCATTTCAATGGAGTACGTGAACACTGCTATGGAGAGACTAGAAAAGAATGATGTTAAATATCGCTTTGTCATTGATGTGGCAAACACCATATAA 1080 0.4722 MSNVLAGSEKGEVSAYGWAARDDSGILSPFHFTRRANGDNDITLEILYCGICHTDLHFARNDFGMSIYPMVPGHEIVGKVTKVGSKVTKFSVGDIAGVGGSVGSCGSCSECSEGFYVYCPKMILTYSARCHDGTVTQGGYSDNLVVDQNFAVLIPKSMPLASTAPLLCAGITVYSPLKYHGLTQPGLHLGVVGLGGLGHVAVKFAKAFGMRVTVISTSPSKKKEALERFGADAFLVSRDQQQLQDAVGTMDAIIDTVSANHSIQPLIGLLKTRGKLILLGGPAKPLEVLAMPLLLGRKMIAGSAGGGREEIQEMINFAAKHNITADVEVISMEYVNTAMERLEKNDVKYRFVIDVANTI 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium566g00007 359 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 323 IPR036291 -
Vium566g00007 359 PANTHER ALDEHYDE REDUCTASE 13 358 IPR047109 GO:0016616
Vium566g00007 359 Pfam Zinc-binding dehydrogenase 196 319 IPR013149 -
Vium566g00007 359 SMART PKS_ER_names_mod 25 353 IPR020843 GO:0016491
Vium566g00007 359 Pfam Alcohol dehydrogenase GroES-like domain 40 152 IPR013154 -
Vium566g00007 359 FunFam probable cinnamyl alcohol dehydrogenase 18 175 - -
Vium566g00007 359 Gene3D - 169 325 - -
Vium566g00007 359 FunFam Cinnamyl alcohol dehydrogenase 169 325 - -
Vium566g00007 359 SUPERFAMILY GroES-like 22 186 IPR011032 -
Vium566g00007 359 CDD CAD1 17 354 IPR047109 GO:0016616
Vium566g00007 359 Gene3D - 18 355 - -
Vium566g00007 359 FunFam Putative cinnamyl alcohol dehydrogenase 6 326 355 - -
Vium566g00007 359 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 73 87 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium566g00007 Vium-Chr566 68771 70576 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium566g00007 14 359 Monolignol Biosynthesis Gene Families AT4G37990 64.451 3.15e-156 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium566g00007 K23232 - gmx:100801089 574.704