Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium566g00006 ATGGCTGCACAAGCTGAACTTGAGCATCCCAGAAAAGCATTCGGATGGGCAGTTAGGGACCCTTCTGGTTTTTTCTCCCCTTTCGATTTCTCCAGAAGGGAAACTGGTGAAAAAGACGTTGCATTCAAAGTGTTGTATTGTGGGATATGTCACTCTGATCTCCACAACGCAAAAAACGAATGGGGCACTTCCACCTATCCACTAGTCCCAGGGCATGAGGTGACTGGTGTAGTGACAGAAGTGGGAAGCAAAGTAGAAAAGTTCAAAGTTGGGGACAAGGTGGGTGTGGGATGCTTGGTTGATTCCTGCCGCAGCTGTCAGAACTGTTCTGACAATCTTGAGAATTATTGTCCACAATATACTCTCACGTATGGTGCCAAATATAAAGATGGTAGCATCACATATGGAGGTTACTCTGATTCAATGGTTGCAGACGAACACTTTGTGGTTCGAATTCCTGATGGCCTACCACTTGATGCTGCTGCACCTCTCCTTTGTGCTGGCATCACAGTTTATAGCCCTCTCAGATATTTTGCACTAGACAAACCTGGTCTGCATGTGGGTGTGGTTGGTCTCGGTGGACTAGGCCATATGGCTGTAAAATTTGCCAAAGCTTTTGGGGCCAACGTCACAGTAATAAGTACTTCACCTTACAAAAAGGAGGAAGCAATACAACATCTTGGAGCTGACTCTTTTCTGATAAGCCGTGACCAAGATCAGATGCAGGCTGCAAAGGGTACTTTGGATGGTATTATCGACACAGTTTCGGGCGTTCATCTTTTGTTACCTCTGATTGGTTTGCTGAAGTCTCATGGAAAGCTTGTAATGCTGGGTGCACCGGAGAAGCCTCTGGAGCTGCCAATCTTTCCTTTACTTAATGCATTTTGA 888 0.4583 MAAQAELEHPRKAFGWAVRDPSGFFSPFDFSRRETGEKDVAFKVLYCGICHSDLHNAKNEWGTSTYPLVPGHEVTGVVTEVGSKVEKFKVGDKVGVGCLVDSCRSCQNCSDNLENYCPQYTLTYGAKYKDGSITYGGYSDSMVADEHFVVRIPDGLPLDAAAPLLCAGITVYSPLRYFALDKPGLHVGVVGLGGLGHMAVKFAKAFGANVTVISTSPYKKEEAIQHLGADSFLISRDQDQMQAAKGTLDGIIDTVSGVHLLLPLIGLLKSHGKLVMLGAPEKPLELPIFPLLNAF 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium566g00006 295 Gene3D - 167 292 - -
Vium566g00006 295 CDD CAD1 14 292 IPR047109 GO:0016616
Vium566g00006 295 Gene3D - 16 166 - -
Vium566g00006 295 PANTHER ALDEHYDE REDUCTASE 6 292 IPR047109 GO:0016616
Vium566g00006 295 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Vium566g00006 295 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 292 IPR036291 -
Vium566g00006 295 FunFam Cinnamyl alcohol dehydrogenase 167 294 - -
Vium566g00006 295 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Vium566g00006 295 Pfam Zinc-binding dehydrogenase 194 292 IPR013149 -
Vium566g00006 295 SUPERFAMILY GroES-like 18 184 IPR011032 -
Vium566g00006 295 SMART PKS_ER_names_mod 23 292 IPR020843 GO:0016491
Vium566g00006 295 FunFam Uncharacterized protein 16 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium566g00006 Vium-Chr566 50540 52067 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium566g00006 11 292 Monolignol Biosynthesis Gene Families AT4G37990 71.631 1.33e-136 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium566g00006 K23232 - gmx:100816901 489.189