Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium566g00005 ATGGCTGCACAAGCTGAACTTGAGCATCCCAGAAAAGCATTCGGATGGGCAGTTAGGGACCCTTCTGGTTTTTTCTCCCCTTTCGATTTCTCCAGAAGGGAAACTGGTGAAAAAGACGTTGCATTCAAAGTGTTGTATTGTGGGATATGTCACTCTGATCTCCACAACGCAAAAAACGAATGGGGCACTTCCACCTATCCACTAGTCCCAGGGCATGAGGTGACTGGTGTAGTGACAGAAGTGGGAAGCAAAGTAGAAAAGTTCAAAGTTGGGGACAAGGTGGGTGTGGGATGCTTGGTTGATTCCTGCCGCAGCTGTCAGAACTGTTCTGACAATCTTGAGAATTATTGTCCACAATATACTCTCACGTATGGTGCCAAATATAAAGATGGTAGCATCACATATGGAGGTTACTCTGATTCAATGGTTGCAGACGAACACTTTGTGGTTCGAATTCCTGATGGCCTACCACTTGATGCTGCTGCACCTCTCCTTTGTGCTGGCATCACAGTTTATAGCCCTCTCAGATATTTTGCACTAGACAAACCTGGTCTGCATGTGGGTGTGGTTGGTCTCGGTGGACTAGGCCATATGGCTGTAAAATTTGCCAAAGCTTTTGGGGCCAACGTCACAGTAATAAGTACTTCACCTTACAAAAAGGAGGAAGCAATACAACATCTTGGAGCTGACTCTTTTCTGATAAGCCGTGACCAAGATCAGATGCAGGCTGCAAAGGGTACTTTGGATGGTATTATCGACACAGTTTCGGGCGTTCATCTTTTGTTACCTCTGATTGGTTTGCTGAAGTCTCATGGAAAGCTTGTAATGCTGGGTGCACCGGAGAAGCCTCTGGAGCTGCCAATCTTTCCTTTACTTAATGGGAGAAAGATAGTAGCCGGAAGTTTGATTGGAGGAATAAAGGAGACCCAAGAGATGATCGACTTTGCTGCTAAACACAACGTAAAACCTATCATTGAGGTCATTCCTATTCATTATGTCAACACTGCAATGGACTGTCTCCTCAAAGCAGATGTAAAATACAGATTTGTGATTGACATAGGAAACACTCTAAAACCAAGCCCTTGA 1086 0.4484 MAAQAELEHPRKAFGWAVRDPSGFFSPFDFSRRETGEKDVAFKVLYCGICHSDLHNAKNEWGTSTYPLVPGHEVTGVVTEVGSKVEKFKVGDKVGVGCLVDSCRSCQNCSDNLENYCPQYTLTYGAKYKDGSITYGGYSDSMVADEHFVVRIPDGLPLDAAAPLLCAGITVYSPLRYFALDKPGLHVGVVGLGGLGHMAVKFAKAFGANVTVISTSPYKKEEAIQHLGADSFLISRDQDQMQAAKGTLDGIIDTVSGVHLLLPLIGLLKSHGKLVMLGAPEKPLELPIFPLLNGRKIVAGSLIGGIKETQEMIDFAAKHNVKPIIEVIPIHYVNTAMDCLLKADVKYRFVIDIGNTLKPSP 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium566g00005 361 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Vium566g00005 361 FunFam Uncharacterized protein 16 166 - -
Vium566g00005 361 CDD CAD1 14 352 IPR047109 GO:0016616
Vium566g00005 361 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Vium566g00005 361 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Vium566g00005 361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 322 IPR036291 -
Vium566g00005 361 PANTHER ALDEHYDE REDUCTASE 6 356 IPR047109 GO:0016616
Vium566g00005 361 FunFam Cinnamyl alcohol dehydrogenase 167 323 - -
Vium566g00005 361 Gene3D - 167 323 - -
Vium566g00005 361 SUPERFAMILY GroES-like 18 184 IPR011032 -
Vium566g00005 361 Gene3D - 16 353 - -
Vium566g00005 361 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium566g00005 Vium-Chr566 50540 52206 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium566g00005 11 361 Monolignol Biosynthesis Gene Families AT4G37990 70.940 3.65e-172 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium566g00005 K23232 - gmx:100816901 598.201