Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium566g00003 ATGTCACCCGATGACATACCACCTTCAAAGCCCGCCACAGCAACAACAACGGACCAAGAGACCCAAAGTTCAGGCGGCAGAAAAGGCTCCTCCACTAGGCCCCAAGAGCAAGGCCTCAAGTGCCCACGATGCGACTCACCCAACACCAAATTCTGCTACTACAACAACTACAGCCTCACACAGCCAAGGCATTTCTGCAAGACATGTAGAAGATACTGGACAAAAGGTGGGGCTTTGCGTAACGTCCCTATTGGCGGTGGATGCAGGAAGAACAAGAAGGTGAGGTCATCGAGGCTTTCATGTGACTCCAAGGACTCTGGTTCCTCCTCTTCAGACCTTGGTGGTCTCAAGTTCCTTCATACTCTTCCTCCTTCCATGGACTTTCACCTCGGAGGGTTACCCTTCCCTAGGCTTCACCATCACCCTCCAGCAACTTATAACCAATTTTCCTCTTTTGGGGACACTTCCAGTGCTTCTTCATGTTTCAACCTTGACCCTTCTCCTGGCACCACCTCAAGTTCTTTCGCTGCTCTTAATTACCCATTTTCTTACAATGGTGCAATCCAAGGTATGAGCGCTATGAATGTTCACAGTGGTCACGCCTCTTCCATTGAGTCTTTGAGTTCTATAAACCAGGACTTGCACTGGAAGTTGCAGCAGCAGCGATTGGCAATGCTGTTTGGTGGAGATAACGGCCAGAAAGATCACGGTGGTAATGGTGGGGTGTCACCAACGATTAACCACCTCGAGAACCAGACACAGAAACCACAACCCATTTTGTTTCAAAATCTTGAGGTTTCAAAGCAAGGGATTTTCCCCGTCGAGAACTCTAGAAAAGAAAATGGTCCATGTGGGGACACACACACACCCTCCACTGAGTGGTTCTTTGGGAATTCTTATGCCTCGGTGACTCCTCCTACAGCTACTACTACCAGTAGTGGTGGCCCAGGGAATGATAATGCAAGCAATTGGAGTAGCGGTGTGAATGCTTGGGGTGATGTGCCGCAGCAATATACTGCTTTGCCCTAG 1029 0.4937 MSPDDIPPSKPATATTTDQETQSSGGRKGSSTRPQEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVRSSRLSCDSKDSGSSSSDLGGLKFLHTLPPSMDFHLGGLPFPRLHHHPPATYNQFSSFGDTSSASSCFNLDPSPGTTSSSFAALNYPFSYNGAIQGMSAMNVHSGHASSIESLSSINQDLHWKLQQQRLAMLFGGDNGQKDHGGNGGVSPTINHLENQTQKPQPILFQNLEVSKQGIFPVENSRKENGPCGDTHTPSTEWFFGNSYASVTPPTATTTSSGGPGNDNASNWSSGVNAWGDVPQQYTALP 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium566g00003 342 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Vium566g00003 342 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 224 IPR045174 GO:0003700|GO:0006355
Vium566g00003 342 MobiDBLite consensus disorder prediction 305 342 - -
Vium566g00003 342 MobiDBLite consensus disorder prediction 9 37 - -
Vium566g00003 342 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Vium566g00003 342 MobiDBLite consensus disorder prediction 305 333 - -
Vium566g00003 342 MobiDBLite consensus disorder prediction 1 41 - -
Vium566g00003 342 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium566g00003 Vium-Chr566 32670 35184 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium566g00003 30 342 C2C2-Dof Transcription Factor Family AT5G65590 38.750 1.61e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium566g00003 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium566g00003 - - gmx:100780729 555.058