Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium566g00001 ATGGATCCGATTCAATCGAACGATATTCAGGAATACCCAGAAACCCTAATCTCAGAGCCCAGCGATTCTCTAATGCAAGATGCCAACGGGTCCGTGTTCGATTCGATGGTTTGCGACTCTACCTCAAGGCTCATCGCAACTGGGTTTACCAAAAAAACAGAAGAGGAATGTTTCATGTTTGTAAATGCTGGAGGGGATGCTTTTAGTGAAGCAGCTGGTGGAATAACGTTCCTGGGCGACACCTATTTTGATGGTGGCAACGTTATGCGGACCAACGAGCGAATAGTGGAGGGTGGAGACTACCCATTTATCTATCAATCAGCTCGGTTGGGAAGCTTTTGTTATAGGTTTGAAAATATTCCTCCTGGGGAATATGTTGTTGATCTTCATTTTGTGGAGATCATTAACATAAATGGGCCAAAAGGGATGAGGGTGTTCAATGTATACATCCAAGATGAAAAGGTTCTGTCTGAATTGGACATCTACGCAATTGTTGGAGCCAATAAGCCTCTACAGTTGGTTGATTCAAGTGTATCTGTTAAGGATGATGGGGTGATTCTAATAAGATTTGAAGGTATATCTGGAAGCCCAGTCGTAAGTGGAATTTGCATTAGGAGAGCAACGAAGGCCTCAGTTCAACAAGTGACAAGTGATCACATTGAATGTAGCCACTGTGCTGCCCATATTGAAATTCCTTCATCACAGATGAAACTTATGCAGGCAAAGTCTATCGCAAAGTATGAGAGTAAGATAAAGGAGCTCACAATGCAATGTGATCTTAAGGCAAAAGAATGCTATGAGGCATGGATGTCGTTAACTGTGACAAATGAGCAATTGGAGACAGTCCAGATGGAACTTGACAAAGTGACAATTAAGTCACATACTACTGATCAAACTGTGGAGAAACAAGCTGAAAGCCTGAGGAATATTTCTAATATGTATGAGCTTGATAAGAAGAAATGGGCAGATGCAATTTGCAGTTTACAAGAAAGGATAAAGTTGATGAAAAGTGATTATTTAAAACTTTCCTTTGAAGCGCATGAATGTGTTGATTCGATTCCTGAATTAAATAAGATGGTTTTTGCAGTTCAGGAATTGGTCAAACAGTGTGAAGATCTAAAAGTGAAGTACAACGAAGAGATGACAAAGAGAAAGAAACTCTTCAACGAAGTTCAAGAGGCTAAAGGGAACATTCGGGTTTTCTGCCGATGCCGTCCATTGAATAAGGCTGAAATCTCAGCTGGATACAATACGGTTGTGGATTTTGATGCAGCAAAGGATGGATCCCTTGGAATTTTGACAAGTGGCTCCGTCAAAAAATCATTCAGATTTGACAGAGTTTATACACCAAAAGATGATCAAGTTGATGTTTTTGCTGATGCATCATCAATGGTAATCTCTGTACTAGATGGCTACAATGTTTGCATCTTTGCTTACGGGCAAACCGGAACAGGGAAAACCTTCACCATGGAAGGAACACAGCAGAACAGAGGAGTAAATTACAGGACTCTTGAGCACTTGTTTAAAGTTAGTAAGGAAAGGAGTGAAACTTTTTCATATGACATATCTGTTAGTGTTCTTGAGGTTTACAACGAACAAATCAGAGACTTATTGGCTAGTGGGCAAACATCAAAAAGATTGGAGATAAAACAAGCTTCTGAAGGATTTCATCATGTTCCTGGTGTAGTAGAAGCCAAAATTGATAGCATAAATGAAGTGTGGAGTGTATTGCAGACCGGAAATAATGCTAGAGCAGTTGGAAGTAACAACGTTAATGAGCATAGCAGTCGATCTCATTGCATGCTATGTATAACAGTAAAGGCTAAAAACTTGTTGAATGGAGACTGTACCAAGAGCAAGCTTTGGCTCGTGGATTTGGCAGGTAGTGAGAGACTTGCAAAGACTGATGCTCAAGGGGAACGACTTAAGGAAGCACAAAATATTAATCGATCTCTTTCTGCTCTTGGAGATGTAATATCTGCTTTGGCAGCTAAAAGTAGTCACATTCCATATAGGAACTCTAAACTAACACATTTACTTCAAGACTCACTAGGAGGTGACTCCAAAACTCTGATGTTTGTACAAATAAGTCCATCAGACCAGGACGTAGGTGAGACCCTGAGCTCGCTTAATTTTGCAACTAGAGTGAGGGGTGTTGAGTTAGGCCCTGTTAAGAGGCAAATTGATACAAGTGAACTTCAAAAGTTGAAAGCAATGCTCGAAAAAGCACGGAGTGATTGCAGAATTAAAGATGATTCTATGCGAAAACTTGAGGAAAATTTGCAAAGCTTGGAGAGTAAGGCCAAAGGCAAGGACCAGATTTACAAAAATTTACAAGAAAAGATTAAAGAACTTGAAGGACAGATTGAGTTGAAGAAAGCCATGCAAAGTGAATCAGAGAAACAAGTCTCTCAATTATCTGACAAATTGAAAGGGAAAGAAGAAACCTGCAGTTCTCTCCAACAAAAGGTGAGAGAGCTAGAGAAAAGGATGAAAGAACAACTGCAGTCAGAGTCAGCAAGTTTTCAACAGAAGGTTTGGGATCTAGAGAAAAGGCTGAAAGATCAGATGCAAGAGTCTGACTCTGAATCTGCCATTTTGAAAGATAAGATAAAGGAGCTTGAGAGGAAACTGAAAGAGCAGGAGAAGAGCTCAATGTCCATGCTTCATCAACAGATGAAGCAACTAGAGGACAGATACAGAGAGCGAGAGCAACAGTGGCAACAAACACAAAGTTATGTGGATGCAGTAAGGGCCACACCAGATATAGGTAAAAGCTTCATGAATGAAGAATGCTCAAGCGAGATTGAGGCCGGCATTTTAAGGTGTTCAGACTCAGTAAACCGCCAGGCAAGCCAAGGTTCTTCTTTGTTCAAAGGGAGTGATTCTACTAATAATAAGATAAGAAGCAGAACAAGAGAGTTCAGAAGCAATGATGAAAACAACTTTGTCATGTCTTCATTGCACGATAGAAGAGTCATAAGGAAATCTGATCCACCCAAAATAATGAGGAGTGTAAGGCCAACACCAAGACCAGCCACTGCTAATCAAGCTCCAGTTTCTCACAAGAGAACTAGTACAAGCAGAGATCAGGTTCAAGGAATAAGAGAGAGGGAAAGTAAGAAGAAAATTTGGTCAAGATAG 3144 0.4043 MDPIQSNDIQEYPETLISEPSDSLMQDANGSVFDSMVCDSTSRLIATGFTKKTEEECFMFVNAGGDAFSEAAGGITFLGDTYFDGGNVMRTNERIVEGGDYPFIYQSARLGSFCYRFENIPPGEYVVDLHFVEIININGPKGMRVFNVYIQDEKVLSELDIYAIVGANKPLQLVDSSVSVKDDGVILIRFEGISGSPVVSGICIRRATKASVQQVTSDHIECSHCAAHIEIPSSQMKLMQAKSIAKYESKIKELTMQCDLKAKECYEAWMSLTVTNEQLETVQMELDKVTIKSHTTDQTVEKQAESLRNISNMYELDKKKWADAICSLQERIKLMKSDYLKLSFEAHECVDSIPELNKMVFAVQELVKQCEDLKVKYNEEMTKRKKLFNEVQEAKGNIRVFCRCRPLNKAEISAGYNTVVDFDAAKDGSLGILTSGSVKKSFRFDRVYTPKDDQVDVFADASSMVISVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLEHLFKVSKERSETFSYDISVSVLEVYNEQIRDLLASGQTSKRLEIKQASEGFHHVPGVVEAKIDSINEVWSVLQTGNNARAVGSNNVNEHSSRSHCMLCITVKAKNLLNGDCTKSKLWLVDLAGSERLAKTDAQGERLKEAQNINRSLSALGDVISALAAKSSHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSDQDVGETLSSLNFATRVRGVELGPVKRQIDTSELQKLKAMLEKARSDCRIKDDSMRKLEENLQSLESKAKGKDQIYKNLQEKIKELEGQIELKKAMQSESEKQVSQLSDKLKGKEETCSSLQQKVRELEKRMKEQLQSESASFQQKVWDLEKRLKDQMQESDSESAILKDKIKELERKLKEQEKSSMSMLHQQMKQLEDRYREREQQWQQTQSYVDAVRATPDIGKSFMNEECSSEIEAGILRCSDSVNRQASQGSSLFKGSDSTNNKIRSRTREFRSNDENNFVMSSLHDRRVIRKSDPPKIMRSVRPTPRPATANQAPVSHKRTSTSRDQVQGIRERESKKKIWSR 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium566g00001 1047 SUPERFAMILY Tropomyosin 735 917 - -
Vium566g00001 1047 FunFam Kinesin-like protein KIN-14R 53 208 - -
Vium566g00001 1047 MobiDBLite consensus disorder prediction 1029 1047 - -
Vium566g00001 1047 Gene3D Kinesin motor domain 343 720 IPR036961 -
Vium566g00001 1047 FunFam kinesin-like protein KIN-14R 346 721 - -
Vium566g00001 1047 PRINTS Kinesin heavy chain signature 471 492 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium566g00001 1047 PRINTS Kinesin heavy chain signature 589 606 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium566g00001 1047 PRINTS Kinesin heavy chain signature 620 638 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium566g00001 1047 PRINTS Kinesin heavy chain signature 669 690 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium566g00001 1047 Pfam Kinesin motor domain 403 718 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium566g00001 1047 MobiDBLite consensus disorder prediction 951 1047 - -
Vium566g00001 1047 CDD KISc_C_terminal 395 721 - -
Vium566g00001 1047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 753 IPR027417 -
Vium566g00001 1047 PANTHER KINESIN-LIKE PROTEIN KLP-3 52 814 IPR027640 GO:0003777|GO:0007018
Vium566g00001 1047 Coils Coil 740 852 - -
Vium566g00001 1047 Pfam Malectin domain 60 202 IPR021720 -
Vium566g00001 1047 SMART kinesin_4 395 727 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium566g00001 1047 MobiDBLite consensus disorder prediction 985 1002 - -
Vium566g00001 1047 Coils Coil 244 264 - -
Vium566g00001 1047 ProSiteProfiles Kinesin motor domain profile. 397 719 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium566g00001 1047 ProSitePatterns Kinesin motor domain signature. 619 630 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vium566g00001 1047 Gene3D - 721 885 - -
Vium566g00001 1047 Gene3D - 53 209 - -
Vium566g00001 1047 MobiDBLite consensus disorder prediction 1010 1028 - -
Vium566g00001 1047 Coils Coil 857 906 - -
Vium566g00001 1047 MobiDBLite consensus disorder prediction 951 965 - -
Vium566g00001 1047 Coils Coil 363 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium566g00001 Vium-Chr566 17708 24545 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium566g00001 369 740 Calmodulin-binding Proteins AT5G65930 42.368 5.66e-85 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium566g00001 K10406 - gmx:100782704 1798.1