Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5667g00020 ATGGCCGGAAGTTCTTCTTCAATTGACATGCCTGAATTTCCATCAAATTTTAATGTTCTTGCCATTGATACTGACCTTAGAGTTCTTGAATTCATCGACAAATCATGCAACGATAATTCTCATAAAGTTAAGATATGCTCTGAATCTTCAAGTGCGGTCGACTTTTTGTTGGAAAAAGAAATAGACTTTCATTTGATTATCATGGAACTCCATATGCCAATGATGGATGGCTATGAATTTCTGCATTTTCTCGATAAAGAAGTAATTGATGTTCCTTTCATCATGATGTCTGAGGATCGTACTCCACTTTCCCAAGAGAAGGCTTTTAATCTTGGAGCTTGTGATTATTGGGTTAAACCCATATTTGAGTATGGGTTTTTGTTCGAGAATAAGCATTTGTGGTCACCTATGTTCCGACATCATTTCCACTGCAGGCGCATAAGGAAAAATATTGATAGCTTGGAAGATGATGAAATAAGTGAGACAAGTTATAGTTCTGAATTCTCTTCTGATGGAGAAGTCGAAGCCGATGATGATAGTCCCCATAAGAAAGAATAG 558 0.3692 MAGSSSSIDMPEFPSNFNVLAIDTDLRVLEFIDKSCNDNSHKVKICSESSSAVDFLLEKEIDFHLIIMELHMPMMDGYEFLHFLDKEVIDVPFIMMSEDRTPLSQEKAFNLGACDYWVKPIFEYGFLFENKHLWSPMFRHHFHCRRIRKNIDSLEDDEISETSYSSEFSSDGEVEADDDSPHKKE 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5667g00020 185 SUPERFAMILY CheY-like 15 124 IPR011006 -
Vium5667g00020 185 Pfam Response regulator receiver domain 19 121 IPR001789 GO:0000160
Vium5667g00020 185 Gene3D - 16 135 - -
Vium5667g00020 185 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 155 IPR045279 GO:0009736
Vium5667g00020 185 SMART REC_2 17 128 IPR001789 GO:0000160
Vium5667g00020 185 ProSiteProfiles Response regulatory domain profile. 18 134 IPR001789 GO:0000160
Vium5667g00020 185 MobiDBLite consensus disorder prediction 156 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5667g00020 Vium-Chr5667 112141 114524 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5667g00020 2 185 Response Regulator Gene Family AT4G16110 28.261 1.14e-16 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium5667g00020 Response_reg 7.5e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5667g00020 - - vra:106765414 239.58