Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5667g00019 ATGGCCGAAATTTCTTCTACTGACCTCCCTGAATTCCCATCAATTCTCAATGTTCTTGTCATCGACAGTGACCTCATTTTTCTTGATTTCATCAAGAAAACATGCAACCAGTATTCTTATGAAGTAATGGTATGTTCTGAATCTCTACATGCTGTCAATATTTTGCAAAAAGGAAAAACGAATATTCATTTGATAGTCATTGAAGTTTATATGCCTGTCATGGATGGCTGCGAATTCCTGCTATTTGTCAAGAAAGAAGGAATTGATGTTCCTGTCATAGTGATGTCTCATGATGATTCTAAGCATTGTATGATGAAGACTATTCGGCTTGGAGCTTGCGATTATTGGAAGAAACCCTTGAAGGAGGATATGTTAAAGGACATGTGGACACATGCTTTTAGAAAGTTTGTAAGGGAACATAGCACCCAAAAAAATATTGGCAGGTTGGATGATGATGATAAAACAAGAGGGACAAGTCATAATTCTGAATCTGCTTCATCCATTCTTGATACGAGCAAAAGTAATTTCAGAGAAGATGATGATCTTGATGAATCAGAATATAATAGTCTAACTGCCACAGGGAAGGATCGCATAGTATGGACACCAGAACTGCATACTAAATTTCTTGATGCTCTTGAAAGTGTTGGACCCGAAAATATCGTGCCAAAGAAAATTCTGAAAGCCATGAACATGCCTAAATTGAAAAGAGGACATGTTGCTAGTCATCTGCAGAACTACAGAAATTTTTTGAAAGAGGAGCGAAAACAGCAACAACAACAACAGAATGAACCAAATGAGATGTCATTGGTTTCAGGTAATAAAAAACCAAAGGTGCAAGCATCAGAAGAAAACAACTTGCAAACTTCGACACATCCTGATCTGACATGTAACATGGGGCCAACAAGAGAGAAACCCTATGATCTAAATGTACAAGTTTCTGAACATTTTCATGAACCAACTTTGGCACATGATCTTTCTTATTCTTTGGCAACGTTTCCTAATATTTCCATTACTAACAATTTTCCTCAATCTTCTGGATATGGACTAAATAATATGCAGAAGCCAATGATGCGTCCTGAAATTCCTCCGATCAACTTGCAGCCATCCTCCATTATTATTTCAGATAATTCAGCTTCTGTTCCACCTCAATCAATACCAGGTTTCTCAAATAGTGGTGTGAGACCTTTTGCTGCCTCCTCAGATATTGATGATCAAACAATCAAGAAGGAGCTAGATTCTAAGAACAACGACCATCACAAGCCCTGA 1266 0.3768 MAEISSTDLPEFPSILNVLVIDSDLIFLDFIKKTCNQYSYEVMVCSESLHAVNILQKGKTNIHLIVIEVYMPVMDGCEFLLFVKKEGIDVPVIVMSHDDSKHCMMKTIRLGACDYWKKPLKEDMLKDMWTHAFRKFVREHSTQKNIGRLDDDDKTRGTSHNSESASSILDTSKSNFREDDDLDESEYNSLTATGKDRIVWTPELHTKFLDALESVGPENIVPKKILKAMNMPKLKRGHVASHLQNYRNFLKEERKQQQQQQNEPNEMSLVSGNKKPKVQASEENNLQTSTHPDLTCNMGPTREKPYDLNVQVSEHFHEPTLAHDLSYSLATFPNISITNNFPQSSGYGLNNMQKPMMRPEIPPINLQPSSIIISDNSASVPPQSIPGFSNSGVRPFAASSDIDDQTIKKELDSKNNDHHKP 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5667g00019 421 Pfam Response regulator receiver domain 18 128 IPR001789 GO:0000160
Vium5667g00019 421 Gene3D - 14 149 - -
Vium5667g00019 421 SUPERFAMILY Homeodomain-like 194 252 IPR009057 -
Vium5667g00019 421 MobiDBLite consensus disorder prediction 403 421 - -
Vium5667g00019 421 MobiDBLite consensus disorder prediction 252 302 - -
Vium5667g00019 421 Coils Coil 240 263 - -
Vium5667g00019 421 MobiDBLite consensus disorder prediction 374 421 - -
Vium5667g00019 421 ProSiteProfiles Response regulatory domain profile. 17 133 IPR001789 GO:0000160
Vium5667g00019 421 MobiDBLite consensus disorder prediction 374 396 - -
Vium5667g00019 421 FunFam Two-component response regulator 191 254 - -
Vium5667g00019 421 MobiDBLite consensus disorder prediction 260 296 - -
Vium5667g00019 421 NCBIfam myb-like DNA-binding domain, SHAQKYF class 195 249 IPR006447 GO:0003677
Vium5667g00019 421 SUPERFAMILY CheY-like 16 148 IPR011006 -
Vium5667g00019 421 MobiDBLite consensus disorder prediction 147 183 - -
Vium5667g00019 421 Gene3D - 191 252 - -
Vium5667g00019 421 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 274 IPR045279 GO:0009736
Vium5667g00019 421 SMART REC_2 16 129 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5667g00019 Vium-Chr5667 102714 104442 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5667g00019 9 260 Response Regulator Gene Family AT2G25180 35.178 6.36e-38 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vium5667g00019 Response_reg 1.8e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5667g00019 - - vun:114178133 462.996