Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5667g00016 ATGGCTATGGCAAAAGAGAAAGAGGAAGATGAAGAGGAGGTTCAGACCTGTGGGAAGAGGTTGAAATGCAAGAGGAATGATGAAGAAGATGATAATGGTGTTGATGAAGAAGAGAGCGAGCTTCCTCTGAAACCAGGGATTTTCTTCTACCCGACAACCCCAACTTCATTTGTTGTCTCTGATGCTCTTGAACCTGATTTTCCGGTCATATATGTCAACAAGGTCTTTGAAATCTCCACTGGATATCGTGCCGACGAGGCCCTTGGTCGCAACTGTCGGTTCTTACAGTATAGAGATCCTCGAGCTCAGAGGCGACACCCTTTGGTGGACCCTGTTGTTGTGTCTGAGATCAGAAGATGTCTTGAGGAAGGTGTTGAGTTCCAAGGTGAACTTTTGAATTTCAGAAAGGACGGCACGCCATTGGTGAACAGACTAAGACTTGCACCAATTCATGACGATGATGGGACTGTGACACACGTAATAGGTATCCAACTCTTTTCTGAGGCAAATATAGATCTGAACCGACTCTCATATCCAGTATTCAAAGAGACTTGCAATCAGGATTTTTCCAAGAATGGTAAATATTCTCCAAAGGGTGGACAATGTTTGTACAGTCAGCAGCAAGAGATGTGCGGCATTCTTCAGCTTTCTGATGAAGTCCTGGCTCACAACATTTTGTCGCGCTTGACACCAAGGGATGTTGCATCCATTGGGTCTGTATGTAGAAGAATACGTCAGTTAACAAAGAATGAGCATGTCAGGAAGATGGTATGTCAGAATGCTTGGGGCAAAGAAGTGACAGGAACATTGGAACTGATGACCAAGAAGTTAGGATGGGGTCGTCTGACTCGGGAACTCACCACCCTTGAGGCTGTTTGTTGGAGAAAACTGACAGTTGGAGGAGCAGTGGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAACCGACTAGTATTGTTTGGAGGTGAAGGAGTGGACATGCAGCCTATGGATGACACTTTTGTTCTAAATCTTGACGCTAAAAATCCAGAATGGCGCAGGGTTAGTGTGAAATCATCCCCACCTGGAAGATGGGGCCACACACTCTCATGTTTAAATGGTTCTTGGTTGGTGGTTTTTGGAGGCTGTGGTAGGCAAGGACTGCTCAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAGCCAACATGGAGGGAAGTCTGTGGTGGAACCCCACCTCTTCCCAGATCATGGCATAGTTCTTGCACAATTGAAGGGTCGAAATTGGTGGTCTCCGGCGGGTGCACGGATGCAGGTGTACTTCTCAGTGACACGTATTTACTGGATCTCACAACGGAGAATCCAACATGGAGAGAAATTCCAACATCATGGGCTCCTCCATCTCGGTTGGGGCACTCACTCTCGGTGTATGGGAGGACAAAACTTCTGATGTTTGGTGGACTTGCCAAGAGTGGACACTTGCGGCTACGATCAGGTGAGGCTTATACAATTGACTTGGAAGATGAACAACCACAGTGGAGGCAGCTAGACTGTAGTGCATTCACGGGATTAGCAAGTCAAAATGCTGTTGTTCCTCCTCCCAGACTGGATCATGTTGCTGTGAGCATGCCTTGTGGGAGGATCATTATATTTGGAGGTTCCATTGCGGGTCTTCACTCACCATCTCAGCTCTTTCTCTTGGACCCTTCTGAAGAGAAACCATCTTGGAGGATCCTCAATGTTCCAGGGCAACCACCTAAGTTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTACTGGTGTTGGGGGGACACACTGGGGAGGAGTGGATACTCAATGAGTTGCACGAGTTATGCCTGGCAAGTCGTCAGGATTCTGACCTGTAA 1881 0.4742 MAMAKEKEEDEEEVQTCGKRLKCKRNDEEDDNGVDEEESELPLKPGIFFYPTTPTSFVVSDALEPDFPVIYVNKVFEISTGYRADEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHVIGIQLFSEANIDLNRLSYPVFKETCNQDFSKNGKYSPKGGQCLYSQQQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTENPTWREIPTSWAPPSRLGHSLSVYGRTKLLMFGGLAKSGHLRLRSGEAYTIDLEDEQPQWRQLDCSAFTGLASQNAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5667g00016 626 FunFam Adagio protein 1 46 175 - -
Vium5667g00016 626 SUPERFAMILY Galactose oxidase, central domain 294 611 IPR011043 -
Vium5667g00016 626 Pfam Galactose oxidase, central domain 421 472 - -
Vium5667g00016 626 Pfam Galactose oxidase, central domain 372 419 - -
Vium5667g00016 626 Pfam Kelch motif 531 578 IPR011498 GO:0005515
Vium5667g00016 626 Gene3D PAS domain 50 175 - -
Vium5667g00016 626 FunFam Putative LOV domain-containing protein 284 489 - -
Vium5667g00016 626 SUPERFAMILY PYP-like sensor domain (PAS domain) 64 164 IPR035965 -
Vium5667g00016 626 CDD F-box_AtADO-like 212 258 - -
Vium5667g00016 626 Pfam PAS domain 63 163 IPR000014 -
Vium5667g00016 626 MobiDBLite consensus disorder prediction 1 29 - -
Vium5667g00016 626 Gene3D - 206 257 - -
Vium5667g00016 626 Gene3D - 287 511 IPR015915 GO:0005515
Vium5667g00016 626 MobiDBLite consensus disorder prediction 1 39 - -
Vium5667g00016 626 SUPERFAMILY F-box domain 206 265 IPR036047 GO:0005515
Vium5667g00016 626 Gene3D - 512 625 IPR015915 GO:0005515
Vium5667g00016 626 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 36 620 - -
Vium5667g00016 626 NCBIfam PAS domain S-box protein 69 163 IPR000014 -
Vium5667g00016 626 Pfam F-box domain 213 250 IPR001810 GO:0005515
Vium5667g00016 626 CDD PAS 53 163 IPR000014 -
Vium5667g00016 626 SMART pac_2 128 169 IPR001610 -
Vium5667g00016 626 Pfam Galactose oxidase, central domain 307 357 - -
Vium5667g00016 626 FunFam Putative LOV domain-containing protein 490 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5667g00016 Vium-Chr5667 84805 88505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5667g00016 56 177 AGC Kinase Gene Family AT5G58140 35.484 9.24e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5667g00016 K12116 - gmx:100301889 1206.43