Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5667g00013 ATGGTGACAAGAAGAAAGCTCCTGAATTTGTTATCAGCTCTAAACGTTTCTGACCTACTTCCTCATCACGCCAATGCAATTAACCGTTTGTCGAAAACCCCCAAAACCCTTAGGGTTTATTACGGAACCCAATCATCCAAACCCCCCGAATACGAGATGCCATCGGTAACATGGGGCGTGATCCAAGGTCGCAAGGAGAAGCTCGTTTCGCGAGTAATCATCTTCGACTACCTCAAGGGTTTGGGAATCATCCCCGACGAGTTGCACGACCTCGAACTTCCCTCCACCGTCGACGTCATGCGCGAGCGCGTCGAGTTTCTCCAAAAAATAGGTTTAACTGTTGACGATATCAACAATTACCCTTTGATCTTAGGTTGCAGTGTCAGAAAAAACGTGATCCCCGTGTTGGGGTACTTAGAAAAAATTGGGATTGCAAGGCCCAAGCTTGGGGGATTCGTTAAGAATTACCCGCAGGTGTTGCATGCTAGTGTCATTGTTGAGCTTGCTCCTGTTGTTAAGTTCCTCAGGGGCCTTGATGTGGAGAAAGATGATATCGGGTATGTGCTGCAGAAGTACCCTGAGCTTCTTGGGTTCAAGCTTGAGGGTACTATGAGCACTTCGGTGGCTTATCTTGTTAGTATTGGTGTGAACCCTAGAGATATCGGTCCAATGGTTACTCAGTATCCTTATTTCTTAGGTATGAGAGTTGGAACTGTGATCAAGCCCTTGATTGATTACTTGGTCGATTTAGGGCTACCGAAGAAGGTTTTGGCTAGGATGTTGGAGAAGAGAGCTTACATTCTTGGCTATGATCTGGAGGAGACTGTGAAACCAAATGTGGAATGTTTGATTAGTTTTGGTGTTAGAAGGGAGTGTTTGGCTTCGGTTATTGCTCAATATCCGCAGATTCTTGGGCTGCCTCTCAAGGCTAAGTTGTCCACGCAGCAGTACTTTTTCAGTTTGAAGCTTAAGGTTGATCCTGAAGGGTTTGCACGGGTGGTGGAGAACATGCCTCAGGTAGTTAGCCTCAACCAGCATGTGATTATGAAGCCCGTTGAATTCCTCCTTGGAAGGACTGTAACAGTGGAGGATGTGGCTAGAATGGTGATCAAGTGTCCTCAGTTGGTGGCATTGAGAGTTGAGCTGATGAAAAACAGCTATTACTTCTTTAAGAGTGAGATGGGGAGGCCATTGAAAGAGCTTGTGGAATTCCCGGAGTACTTTACTTATAGTTTGGAATCTAGAATCAAACCCAGATACCAGAGGCTCAAGAGTAAGGGGATAAGATGTTCGTTGAATTGGATGCTGAATTGTAGTGACCAGAGGTTTGAAGAGAGGTTGCAGGGTCATTACATTGAAACTGAAAGTGTAGGTCCCAGATTCTGTATGGGAGGGAAATTGGAGCTACCGGGGAATGACATAATGTCTGATGACGAAGCTGAGAGTGATGATGAAATACTATATACAAGAACTGTTTCTCTATAG 1485 0.4532 MVTRRKLLNLLSALNVSDLLPHHANAINRLSKTPKTLRVYYGTQSSKPPEYEMPSVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELHDLELPSTVDVMRERVEFLQKIGLTVDDINNYPLILGCSVRKNVIPVLGYLEKIGIARPKLGGFVKNYPQVLHASVIVELAPVVKFLRGLDVEKDDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTVIKPLIDYLVDLGLPKKVLARMLEKRAYILGYDLEETVKPNVECLISFGVRRECLASVIAQYPQILGLPLKAKLSTQQYFFSLKLKVDPEGFARVVENMPQVVSLNQHVIMKPVEFLLGRTVTVEDVARMVIKCPQLVALRVELMKNSYYFFKSEMGRPLKELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGHYIETESVGPRFCMGGKLELPGNDIMSDDEAESDDEILYTRTVSL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5667g00013 494 Gene3D Transcription termination factor 3, mitochondrial 241 454 IPR038538 -
Vium5667g00013 494 Gene3D Transcription termination factor 3, mitochondrial 101 240 IPR038538 -
Vium5667g00013 494 FunFam Transcription termination factor MTERF4, chloroplastic 238 452 - -
Vium5667g00013 494 FunFam Transcription termination factor mterf4, chloroplastic 100 237 - -
Vium5667g00013 494 SMART mt_12 150 181 IPR003690 GO:0003690|GO:0006355
Vium5667g00013 494 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Vium5667g00013 494 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Vium5667g00013 494 SMART mt_12 398 429 IPR003690 GO:0003690|GO:0006355
Vium5667g00013 494 SMART mt_12 114 145 IPR003690 GO:0003690|GO:0006355
Vium5667g00013 494 SMART mt_12 222 253 IPR003690 GO:0003690|GO:0006355
Vium5667g00013 494 SMART mt_12 331 361 IPR003690 GO:0003690|GO:0006355
Vium5667g00013 494 SMART mt_12 294 326 IPR003690 GO:0003690|GO:0006355
Vium5667g00013 494 SMART mt_12 366 397 IPR003690 GO:0003690|GO:0006355
Vium5667g00013 494 PANTHER CGI-12 PROTEIN-RELATED 139 451 IPR003690 GO:0003690|GO:0006355
Vium5667g00013 494 Pfam mTERF 136 444 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5667g00013 Vium-Chr5667 66206 68300 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium5667g00013 mTERF 1.6e-108 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5667g00013 K15031 - gmx:100809590 897.116