Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5667g00011 ATGGCCGAACGTGGAAGTGGAGATCGTGGTGGATTCGGTCGTGGCTTCGGCGGTCGCGGTCGCGGCGACAGGGGCCGTGGCGGACGCCGTAGGGCCGGGCGCCGCGAGGAGGAGGAAAAATGGGTTCCTGTAACGAAACTTGGACGCCTCGTAAAGGATGGTAAAATCCGGAGCCTGGAACAGATCTACCTGCACTCACTCCCAATTAAGGAGCACCAAATAATCGACACCCTCGTCGGTCCTACTCTCAAAGACGAGGTCATGAAGATCATGCCTGTCCAGAAACAGACTCGCGCCGGTCAGCGTACGCGCTTCAAGGCCTTCGTCGTCGTTGGTGACGGTAACGGCCACGTGGGTCTCGGTGTCAAGTGCAGCAAGGAAGTCGCCACCGCCATTCGTGGCGCCATTATCTTGGCTAAGCTCTCTGTTATTCCCGTCAGGAGAGGGTATTGGGGAAACAAGATTGGAAAGCCCCACACCGTTCCCTGTAAGGTTACCGGAAAGTGTGGTTCCGTCACAGTTCGCATGGTCCCTGCCCCTCGTGGGTCCGGTATCGTCGCTGCCAGGGTCCCCAAAAAGGTATTGCAGTTCGCCGGAATCGATGATGTTTTCACCTCCTCCAGAGGTTCAACCAAAACCCTCGGAAACTTCGTCAAGGCCACTTTTGATTGCCTGCTTAAAACCTACGGTTTTCTAACACCCGAATTCTGGAAGGAAACTCGCTTCTCTAAATCACCATTCCAAGAATACACAGATCTATTGGCAAAGCCAACAGGAAAGGCCCTTATCCTGGAAGAGGAAAGAGTTGAAGCTTGA 816 0.5453 MAERGSGDRGGFGRGFGGRGRGDRGRGGRRRAGRREEEEKWVPVTKLGRLVKDGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFSKSPFQEYTDLLAKPTGKALILEEERVEA 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5667g00011 271 FunFam 40S ribosomal protein S2 40 145 - -
Vium5667g00011 271 FunFam 40S ribosomal protein S2 146 239 - -
Vium5667g00011 271 SUPERFAMILY Ribosomal protein S5 domain 2-like 159 239 IPR020568 -
Vium5667g00011 271 ProSitePatterns Ribosomal protein S5 signature. 100 132 IPR018192 -
Vium5667g00011 271 Gene3D - 40 145 - -
Vium5667g00011 271 SUPERFAMILY dsRNA-binding domain-like 79 148 - -
Vium5667g00011 271 ProSiteProfiles S5 double stranded RNA-binding domain profile. 83 146 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vium5667g00011 271 NCBIfam 30S ribosomal protein S5 36 243 IPR005711 GO:0003735|GO:0006412|GO:0015935
Vium5667g00011 271 Pfam Ribosomal protein S5, C-terminal domain 167 239 IPR005324 GO:0003735|GO:0005840|GO:0006412
Vium5667g00011 271 PANTHER RIBOSOMAL S SUBUNIT 28 229 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vium5667g00011 271 MobiDBLite consensus disorder prediction 19 38 - -
Vium5667g00011 271 MobiDBLite consensus disorder prediction 1 38 - -
Vium5667g00011 271 Gene3D - 146 239 IPR014721 -
Vium5667g00011 271 Pfam Ribosomal protein S5, N-terminal domain 83 147 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5667g00011 Vium-Chr5667 51781 53830 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5667g00011 37 259 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 91.480 1.41e-152 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5667g00011 K02981 - gmx:100797105 475.707