Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5667g00010 ATGTCTTCCTCAAATTCCGCCCCTCAGCCCCACGCGCCGCTGCTCATCCCGCGTCCCGATGCCGCCACGGCCCGTCTCCCCGTCCTCGCACTCCTCCTCGGCCGCCGCGGCCATTCCGCCGTCGTCCGGGAGACCGCGGCCCGTGAGCTCGACGAGCGCCGCGCCGACTGGACATACTCGAAGCCGGTGGTGGCGCTCGACATGACATGGAACATGGCCTTTGTGGTGGTCTCAGCGGTGATGCTCGCCTGCACCGTCAAGGAAAATCCCAACACGCCGATCCGGTGGTGGATCTGCGGCTACGCCCTGCAGTGCCTCCTCCACGTGGCGCTCGTGTGGGTTGAGTACAGGAGGAGGAGCGACGCGCCCAGGGACGAGGAGTCTGGCGGCCACCTCGAATATGACGACGTCAACGACAGCGAAGAGGAGGATTCTGGAACCTCTGGGAGTTCCCCTTCCACTGGATTCACAAAACGATGCGCATCATTGAATACCATGGTTTCGTTACTTTGGTGGATGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATTCTTCTGCAAGATGCTCCACGTTTGTACTGGTTGGCTGTTGTCTTCCTTGCATTTGATGTCTTTTTTGCCATCTTTTGTGTTGTGTTGGCATGCTTGATTGGAATTGCTCTCTGTTGTTGTTTACCCTGTATTATTGCTATTCTCTATGCTGTTGCAGGACAGGAAGGTGCATCAGAATCGGATCTCAGTGTACTTCCGAGATACAAATATCAAATGTTAAGCAATGAGGAAACACCTAGTAAGGGAGGTGGATCAATGATTCCCGTGGAGACTATCAGTGGTTACTCAGTGAATGAACGAATACTTTCACCTGATGATGCAGAATGCTGTATATGCATCTCTTCTTATGAGGATGGAGCAGAACTTCATGTTCTTCCGTGTAACCATCATTTCCATTCTACATGCATAGTGAAATGGCTGAAGATGAATGCAACTTGTCCTCTTTGCAAGTTCAATATTCTGAAGGGAAATGAACAGGTGTGA 1038 0.525 MSSSNSAPQPHAPLLIPRPDAATARLPVLALLLGRRGHSAVVRETAARELDERRADWTYSKPVVALDMTWNMAFVVVSAVMLACTVKENPNTPIRWWICGYALQCLLHVALVWVEYRRRSDAPRDEESGGHLEYDDVNDSEEEDSGTSGSSPSTGFTKRCASLNTMVSLLWWMVGFYWVVSGGDILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASESDLSVLPRYKYQMLSNEETPSKGGGSMIPVETISGYSVNERILSPDDAECCICISSYEDGAELHVLPCNHHFHSTCIVKWLKMNATCPLCKFNILKGNEQV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5667g00010 345 CDD RING-H2_PA-TM-RING 293 335 - -
Vium5667g00010 345 ProSiteProfiles Zinc finger RING-type profile. 294 335 IPR001841 -
Vium5667g00010 345 SUPERFAMILY RING/U-box 284 339 - -
Vium5667g00010 345 PANTHER TARGET OF ERK KINASE MPK-1 34 343 - -
Vium5667g00010 345 FunFam E3 ubiquitin protein ligase RIE1 274 342 - -
Vium5667g00010 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 343 IPR013083 -
Vium5667g00010 345 MobiDBLite consensus disorder prediction 122 155 - -
Vium5667g00010 345 Pfam Ring finger domain 293 335 IPR001841 -
Vium5667g00010 345 SMART ring_2 294 334 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5667g00010 Vium-Chr5667 47050 50799 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5667g00010 4 344 C3H Transcription Factor Family AT1G68070 65.994 4.58e-163 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5667g00010 - K13148 gmx:100797651 610.142