Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5667g00003 ATGAAACTGGGTTTGAAGCTTCTGCAAGAGAGGGCAAAAGTTGGGTCCTTTTGGTGGCCGTACATAAGTAATCTCCCTGAAACATACACCGTGCCTATTTTCTTTCCTGGGGAGGACATAAAAAACTTGCACTATGCTCCACTTCTTCATCAGGTAAACAAAAGATGTCGGTTTCTTCTTGATTTTGAGCAAGAAGTGAAGCGTGCCTTAGCGAGTGTTAAGCCAGATAGCCATCCTTTTGGTGGTCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTCTCATCTAGGGCCTTCAGGTTGTATGGTGAAAAGGATCAGAATGGGGACCGGATTCACATACCCATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGGAAGAAGATACCGATACCATGAAGATGCAAGTGAAGGTTGTGGCTGAGACAGCCATCAAAGAAGATGATCCTCTGTTACTTTGCTACGGCTGTTTAAACAATGATTTTTTCCTTCTTGATTATGGATTTGTGATTCACTCAAACCCTTTTGATTGTATCGAGCTCAAATATGATGGCGCTCTTTTGGATGCTGCAAGCACTGCAGCTGGAGTTTCTTCACCAAATTTCTCAGCACCTGCTCCATGGCAGGAACTGATTTTATCTCAGTTGAATCTATCTGGAGAAACTCCAGATCTCAAGGTGAGCTTAGGTGGTCAAGAAACAGTAGAGGGCCGCTTGGTGGCTGCATTGCGAGTAGTCCTTTCGAGTAATGTGGAAACTGTGCAGAAGTATGATCTCAGTACACTAAAGTCTTTGGATGTTGAGGCTCCTCTCGGTGTTGCAAATGACATAGCTGTATTTCGCACCCTAATTGCTTTGTGCGTCATCGCATTGGAACACTTTCCGACCAAAATAATGGATGATGAATCTCTGTTGAAGCAGGGTGCTTCAGGTTCAACCGAGTTAGCCATTCAGTACAGAATCCAAAAGAAATGCGTGATTATAGACGTAATGAAAAATCTCTCAAGGAGGGTAAAGCTTCTATCATCAAAGGAAACAGCTACCCCTGAAGGCTGA 1095 0.4347 MKLGLKLLQERAKVGSFWWPYISNLPETYTVPIFFPGEDIKNLHYAPLLHQVNKRCRFLLDFEQEVKRALASVKPDSHPFGGQEVDASSLGWAMSAVSSRAFRLYGEKDQNGDRIHIPMMLPLIDMCNHSFNPNARIVQEEDTDTMKMQVKVVAETAIKEDDPLLLCYGCLNNDFFLLDYGFVIHSNPFDCIELKYDGALLDAASTAAGVSSPNFSAPAPWQELILSQLNLSGETPDLKVSLGGQETVEGRLVAALRVVLSSNVETVQKYDLSTLKSLDVEAPLGVANDIAVFRTLIALCVIALEHFPTKIMDDESLLKQGASGSTELAIQYRIQKKCVIIDVMKNLSRRVKLLSSKETATPEG 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5667g00003 364 Gene3D set domain protein methyltransferase, domain 1 1 183 - -
Vium5667g00003 364 Pfam Rubisco LSMT substrate-binding 218 339 IPR015353 -
Vium5667g00003 364 ProSiteProfiles SET domain profile. 71 169 IPR001214 GO:0005515
Vium5667g00003 364 Gene3D - 220 361 IPR036464 -
Vium5667g00003 364 FunFam Histone-lysine N-methyltransferase setd3 1 182 - -
Vium5667g00003 364 FunFam SET domain containing protein 205 358 - -
Vium5667g00003 364 SUPERFAMILY SET domain 3 187 IPR046341 -
Vium5667g00003 364 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 3 326 - -
Vium5667g00003 364 Pfam SET domain 20 169 IPR001214 GO:0005515
Vium5667g00003 364 CDD SET_LSMT 1 183 - -
Vium5667g00003 364 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 179 358 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5667g00003 Vium-Chr5667 7156 10441 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium5667g00003 SET 2.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5667g00003 - - gsj:114413660 659.833