Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5667g00002 ATGGCCACTTCGAAGACGGTGATGTGTTCGCTGACCCACTTGCGTCCGCTAACATGCGCCGCATCTGCATCGGCGTCACGAATAGTTCCCTACCCACCCGACCTCATAAAGTGGGTAACCAGAGAGGGCGGGTTCGTGCACCGCGCGCTCGATATAGCACAACTGGGTTCATCCAACGGACTGGGTCTAGTGGCCAAGGAACCAATTCCACGTGGCACTGACCTAATTGTCCTCCCGCACCACCTTCCCTTGCGCTTTACCACTCTTGAACACGACCCTGTGCTGCATCACTTGGCGCGCCAAATCCCTGAGGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTGCAAGAGAGGGCAAAAGTTGGGTCCTTTTGGTGGCCGTACATAAGTAATCTCCCTGAAACATACACCGTGCCTATTTTCTTTCCTGGGGAGGACATAAAAAACTTGCACTATGCTCCACTTCTTCATCAGGTAAACAAAAGATGTCGGTTTCTTCTTGATTTTGAGCAAGAAGTGAAGCGTGCCTTAGCGAGTGTTAAGCCAGATAGCCATCCTTTTGGTGGTCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTCTCATCTAGGGCCTTCAGGTTGTATGGTGAAAAGGATCAGAATGGGGACCGGATTCACATACCCATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGGAAGAAGATACCGATACCATGAAGATGCAAGTGAAGGTTGTGGCTGAGACAGCCATCAAAGAAGATGATCCTCTGTTACTTTGCTACGGCTGTTTAAACAATGATTTTTTCCTTCTTGATTATGGATTTGTGATTCACTCAAACCCTTTTGATTGTATCGAGCTCAAATATGATGGCGCTCTTTTGGATGCTGCAAGCACTGCAGCTGGAGTTTCTTCACCAAATTTCTCAGCACCTGCTCCATGGCAGGAACTGATTTTATCTCAGTTGAATCTATCTGGAGAAACTCCAGATCTCAAGGTGAGCTTAGGTGGTCAAGAAACAGTAGAGGGCCGCTTGGTGGCTGCATTGCGAGTAGTCCTTTCGAGTAATGTGGAAACTGTGCAGAAGTATGATCTCAGTACACTAAAGTCTTTGGATGTTGAGGCTCCTCTCGGTGTTGCAAATGACATAGCTGTATTTCGCACCCTAATTGCTTTGTGCGTCATCGCATTGGAACACTTTCCGACCAAAATAATGGATGATGAATCTCTGTTGAAGCAGGGTGCTTCAGGTTCAACCGAGTTAGCCATTCAGTACAGAATCCAAAAGAAATGCGTGATTATAGACGTAATGAAAAATCTCTCAAGGAGGGTAAAGCTTCTATCATCAAAGGAAACAGCTACCCCTGAAGGCTGA 1419 0.4658 MATSKTVMCSLTHLRPLTCAASASASRIVPYPPDLIKWVTREGGFVHRALDIAQLGSSNGLGLVAKEPIPRGTDLIVLPHHLPLRFTTLEHDPVLHHLARQIPEELWAMKLGLKLLQERAKVGSFWWPYISNLPETYTVPIFFPGEDIKNLHYAPLLHQVNKRCRFLLDFEQEVKRALASVKPDSHPFGGQEVDASSLGWAMSAVSSRAFRLYGEKDQNGDRIHIPMMLPLIDMCNHSFNPNARIVQEEDTDTMKMQVKVVAETAIKEDDPLLLCYGCLNNDFFLLDYGFVIHSNPFDCIELKYDGALLDAASTAAGVSSPNFSAPAPWQELILSQLNLSGETPDLKVSLGGQETVEGRLVAALRVVLSSNVETVQKYDLSTLKSLDVEAPLGVANDIAVFRTLIALCVIALEHFPTKIMDDESLLKQGASGSTELAIQYRIQKKCVIIDVMKNLSRRVKLLSSKETATPEG 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5667g00002 472 Pfam SET domain 60 277 IPR001214 GO:0005515
Vium5667g00002 472 FunFam Histone-lysine N-methyltransferase setd3 3 290 - -
Vium5667g00002 472 FunFam SET domain containing protein 313 466 - -
Vium5667g00002 472 Pfam Rubisco LSMT substrate-binding 326 447 IPR015353 -
Vium5667g00002 472 CDD SET_LSMT 60 291 - -
Vium5667g00002 472 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 287 466 IPR036464 -
Vium5667g00002 472 SUPERFAMILY SET domain 33 295 IPR046341 -
Vium5667g00002 472 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 34 434 - -
Vium5667g00002 472 Gene3D set domain protein methyltransferase, domain 1 11 290 - -
Vium5667g00002 472 SMART set_7 48 283 IPR001214 GO:0005515
Vium5667g00002 472 Gene3D - 328 469 IPR036464 -
Vium5667g00002 472 ProSiteProfiles SET domain profile. 48 277 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5667g00002 Vium-Chr5667 7156 10668 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium5667g00002 SET 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5667g00002 - - gmx:100778387 836.639