Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5666g00001 ATGTCATCCTCTTCCACCACAATATCACTGGACCACCTCCCTCCTTCCGAACAGCTTTGTTATGTTCACTGCAATATTTGTGACACCGTCCTCGCTGTAAGTGTTCCCTGCACAAGCTTGTTCAAGACAGTTACTGTCCGATGCGGCCATTGCACTAACCTCCTGCCAGTGAACATGCGCGGCCTGCTTGTGCCATCTCCTACTCAATTTCATTTGGGTCACTCTTTCTTCTCCCCATCCCATAACCTTCTGGAGGAGATACCAAACCCATCTCCAAATTTTCTTATGAACCAAGCAAATTTAAGTGCTTCAAATGAGTTCTCTCTGCCTGCCAGGACTGCAGCTGATGAGCTTCCACGGCCACCGATCATAAACAGACCTCCTGAGAAGAGACAGAGAGTCCCCTCCGCGTACAACCGCTTTATCAAGGACGAGATCCAACGCATCAAGTCTGTCAATCCCGATATAACTCACAGGGAAGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTCCCACACATCCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGAAGAGGTTCTCATGAAAGATGGGTTTTATGCTTCAGCTAATGTTGGTGTCTCACCCTACTAA 648 0.4861 MSSSSTTISLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLVPSPTQFHLGHSFFSPSHNLLEEIPNPSPNFLMNQANLSASNEFSLPARTAADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVCQQEGEEVLMKDGFYASANVGVSPY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5666g00001 215 PANTHER PROTEIN YABBY 6-RELATED 1 189 IPR006780 GO:0007275
Vium5666g00001 215 Pfam YABBY protein 15 179 IPR006780 GO:0007275
Vium5666g00001 215 SUPERFAMILY HMG-box 123 172 IPR036910 -
Vium5666g00001 215 CDD HMG-box_SF 133 169 - -
Vium5666g00001 215 FunFam Axial regulator YABBY 124 195 - -
Vium5666g00001 215 Gene3D High mobility group box domain 124 187 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5666g00001 Vium-Chr5666 26844 29858 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5666g00001 26 213 C2C2-YABBY Transcription Factor Family AT4G00180 59.330 5.55e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vium5666g00001 YABBY 2.6e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5666g00001 K25796 - gmx:100798441 434.491