Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium5663g00004 | ATGGTTTTCTGCAATACATTGGATTCTAGTCGTGCTGTGGATCATTTTCTTGGTGAAAATCAGATTTCTACTGTAAACTACCATGGTGAGGTACCAGCAGAGCAAAGGGTTGAAAATCTCAGAAAGTTTAAGAGTGATGGTGATGATTGTCCTACGTTGGTTTGCTCAGACCTGGCTGCTAGGGGTCTAGACTTGGATGTAGATCAAGTTGTGATGTTTGACTTCCCCTTGAATTCTATTGACTACCTTCATCGCACAGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAGGTAACAAGTTTAGTTGCTAAAAAGGACTTGGACTTGGCCAGCAAAATAGAGGAAGCAATAAGGAACAATGAGAGTTTGGAGGCTATCACAAAAGAAAGTGTTCGAAGGGACACTGCAAGGACCCAAATCACAGAGCAGAAAGGAAAGGGTAGAAAAATGGTTCAAGTTTCAAAAGTCAAGGGCAAATTTGGTAGTCGTTCCAGTTCTGGAAATAATGGATCAGGTATAAAATCTGGCAAAGCTTCACCTGTCAAATCTATGAAAAAAGGGATTAACGTTTCAAAATCTGGGAATTCTTCTAGGGCAAGTAGCACCATTAGAAAAGGTTCTTCAGATAAGAGGCAAACAGGTAAAGTGGTCAGTACCACCAAATCTACGAATTCTAAACTCAATGTGGTTGGTTTTCGGGGAAAAAAATCATCTTCAAATAACAATGGTTCGGTTTTGTGA | 741 | 0.4049 | MVFCNTLDSSRAVDHFLGENQISTVNYHGEVPAEQRVENLRKFKSDGDDCPTLVCSDLAARGLDLDVDQVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLDLASKIEEAIRNNESLEAITKESVRRDTARTQITEQKGKGRKMVQVSKVKGKFGSRSSSGNNGSGIKSGKASPVKSMKKGINVSKSGNSSRASSTIRKGSSDKRQTGKVVSTTKSTNSKLNVVGFRGKKSSSNNNGSVL | 246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium5663g00004 | 246 | CDD | SF2_C_DEAD | 1 | 102 | - | - | |
| Vium5663g00004 | 246 | SMART | helicmild6 | 11 | 93 | IPR001650 | - | |
| Vium5663g00004 | 246 | MobiDBLite | consensus disorder prediction | 128 | 144 | - | - | |
| Vium5663g00004 | 246 | Pfam | Helicase conserved C-terminal domain | 1 | 93 | IPR001650 | - | |
| Vium5663g00004 | 246 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1 | 132 | IPR001650 | - | |
| Vium5663g00004 | 246 | MobiDBLite | consensus disorder prediction | 212 | 246 | - | - | |
| Vium5663g00004 | 246 | MobiDBLite | consensus disorder prediction | 128 | 246 | - | - | |
| Vium5663g00004 | 246 | MobiDBLite | consensus disorder prediction | 186 | 203 | - | - | |
| Vium5663g00004 | 246 | Gene3D | - | 1 | 224 | IPR027417 | - | |
| Vium5663g00004 | 246 | MobiDBLite | consensus disorder prediction | 158 | 176 | - | - | |
| Vium5663g00004 | 246 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 | 1 | 130 | - | - | |
| Vium5663g00004 | 246 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 128 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium5663g00004 | Vium-Chr5663 | 47558 | 49735 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium5663g00004 | 1 | 115 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 31.933 | 1.57e-12 | 64.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium5663g00004 | - | - | pvu:PHAVU_004G0886000 | 377.867 |