LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium5663g00002	ATGGCACTGAGAATCGCACCATCCTTGTCTTCCTCGAGGCCCACATGGATTTATGATGTCTTTCTAAGTTTTAGAGGAGAAGACACTCGTTTTCACTTTACTGACAATCTCTACCATTCCTTGTGCCAAAAGGGGATTCGTACTTTCATCGACCAGGAAGGTCTTAGAAAAGGGGAAGAGATTACTCCTGCTCTTTTTCACGCAATTCAAAATTCAAGGATTTCCATCATTGTCTTCTCCGAAAACTATGCATCTTCAACCTATTGCTTAAATGAACTTGTAAAGATCCTTGAATGCGCAAAGAAAGAAGGTCGATCAATTTATCCTATATTTTATGGAGTGGATCCATCGGAAATTCGACATCAGACTGGAATTTGTGCAGAAGCATTGTCAAAACACGAAACTAAGTTCTACAATGACGCTGACAATGAGAAGGGACAGAAATGGAGGAAGGCCTTACATGAAGCAGCTAATCTATCGGGCTGGCATTTCCAACATGGGTCTCAACCAGAATATGAGTTTATCAGTAAGATTGTTGAAGAGATCTCTGAAAAGGTAAATTGCATCCCTTTACATGTTGCTGATAATGCAATTGGGCTGGAGTATGCAGTGCAAGGAGTGAAATCTCTCCTTGGAGATGGGTCTGATGTCAACATGATAGGAATTTATGGTATCGGGGATATAGGTAAAACCACGATTGCTCGTGCTGTGTATAACACTATCTTTTGGCATTATCAAGGTTCGTGTTTTCTATCTGACATTAGAGAAAAGGCAATTAATAAACATGGGATTGTCCAACTCCAAGAAATACTACTTTCTGAGACATTCAAAGAAGGTATTAAAGTGGGGGATGTCAATAGAGCAATACCAATATTAAAAGGGAGACTTCAACAGAAGAAGGTCCTTTTAGTTCTTGATGATGTTGACGAATTAGAGCAGTTAAAGGCACTTGCAGGGGGATATGATTGGTTTGGCTCTGGAAGTATAATCATCATCACCACAAGAAACAAGCACTTGCTAGATGCTCATGGGGTAGTTAACTTATATGAGGTTAAACCATTAAACGTTGAAAAAGCTTTCGAATTGTTTAACTGGCATGCCTTCAAAAATGGTAAAGTTGATCCATCTTATATGAACATTTCCAAGCGTGCAGTTTCTTATGCGTGTGGCCTTCCGTTGGCTTTGGAAGTTATAGGATCCCACTTATTTGGAAAAAACATAAATGAGTGCAGTTCTGCATTAGATAAATATGAAAGTATTCCTCATGAGAAAATTCATGAAATACTAAAAGTAAGCTATGATGGTTTGGAAGAAAATGAGAAGGGAATTTTCCTAGACATTGCTTGTTTCTTCAATACCTGGGAACTGGGTAATGTCAGACCAATGCTAAAAGCTCATGGTTTTCATGTAGAAGATGGTTTGAGAGTGTTGGTTGACAGATCTCTCATAAAGATTGATTATTCTGATTTTGTGAGAATACATGACCTAATTCGAGACACAGGCAGAGAAATTGTAAGGCAGGAATCAACAATTGAGCCAGGCAGACGTAGTAGATTATGGTTTAACGAGGACATTGTTCATGTTCTGGAAGAAAATACGGGATCTGATAAAATAGAATTCATAAAGCTTGAAGGGTACAATAACGTACAAGTGCAATGGGATGGAAAAGCCTTCAAGGAAATGAAGAACTTGAGAATTTTGATTATTGAAGGTTCAAGGTTTTCTACAGGCCTCAAGCATCTACCAAATAGCTTGCGAGTGCTAGACTGGAGTTGCTATCCTTCGCCATCTTTACCTTCTGATTTCAATCCCAAACGTTTTGAGATACTCCTTCTGCCTGAGAGTTGCCTTCAGATGTTGAAACCACAAAATATGTTGGAATCATTGTCTGTAATAAGCCTTCAAGATTGCAAGTTCTTAACTGATCTACCAAGCCTACGAGACGCACCATTCTTAACAACTCTGCGTCTCGATAATTGCTGTAATTTAGTTAACATTGATGAATCAATTGGGTTTCTTGATAAGCTTCGCTTCTTGAGTGCTAGCTATTGCACCAAGCTCTGCATCATGTTGACATCTCTTGAAACTTTGGATCTTGGGAGGTGCTTTAGTCTCGAGAGCTTCCCAGAAGTATTGGGAAAGATGGAGAAAATAAGGACAATATATTTAGATTGTACAGGCATAGACAAATTGCCATTGTCAATTGGAAATTTTGTTTGGCTTGAGCTATTGTCGTTGACGGAATGCGAAAGGCTTCATCAGCTACCAGGTAGTATAAGCATAATGCCCAAAGTTAAAGTGCTAGTTGGTTATGGGCATGGAGCATATCAAATTTTTCAAGAGCAGTTGAGCTCAGAGGTGTCTCCAAGGGCCATGCTTATTGGTGATTCTGACCTATATCTTGATGTGTATTATTCATACATAAGTCCCAATAATTCCATCCAAGTATGCAGTCCTGATCCTCTTTTCCATTCTGATTTCAATTTGTTATTCCCAAAACTTGGAAGGGAAGAGGACTGGCTTTGTTTTCGCAGGGAATCATCTATGCATTTCTCCTTTCGAAACAAATTTCCTAAGATAGCGCTATGTTGTTCGATACTATTGCCTTTGTTGAAAATTATCATGGTAATGAATTTGAAGTTCAGAGTATTCATTAATGATACTCTACAATTCAGTGCTCTGTGCAATTTCATACTAAGAGAGTGGGACACAATACTCTGGTGTGATCTAGAAGGCAAAGTGGAGGGGGTGTTCTCAGATGAAGAGTGGAATAAAGCTGAGATTGTATTTGAGTTGGACTTCCCTATGCGAAGAAATAGTAGAAATGGGAACACAAGAAGGAGCATTGGTATAGGAAGTCTAGGTTGGAGCCTAATGGGTGTGTATGAGGAAGGAAATAATAAAGAGGATATCGAATTCAAAGATCCCGTGTCAGTTTTTCCATTATGTAACAGACAACCTCCTTCTTCATTACCTACTTCTTTGTACTATGTCGTTAGCAGAGGAAAGCCTTAA	3015	0.3897	MALRIAPSLSSSRPTWIYDVFLSFRGEDTRFHFTDNLYHSLCQKGIRTFIDQEGLRKGEEITPALFHAIQNSRISIIVFSENYASSTYCLNELVKILECAKKEGRSIYPIFYGVDPSEIRHQTGICAEALSKHETKFYNDADNEKGQKWRKALHEAANLSGWHFQHGSQPEYEFISKIVEEISEKVNCIPLHVADNAIGLEYAVQGVKSLLGDGSDVNMIGIYGIGDIGKTTIARAVYNTIFWHYQGSCFLSDIREKAINKHGIVQLQEILLSETFKEGIKVGDVNRAIPILKGRLQQKKVLLVLDDVDELEQLKALAGGYDWFGSGSIIIITTRNKHLLDAHGVVNLYEVKPLNVEKAFELFNWHAFKNGKVDPSYMNISKRAVSYACGLPLALEVIGSHLFGKNINECSSALDKYESIPHEKIHEILKVSYDGLEENEKGIFLDIACFFNTWELGNVRPMLKAHGFHVEDGLRVLVDRSLIKIDYSDFVRIHDLIRDTGREIVRQESTIEPGRRSRLWFNEDIVHVLEENTGSDKIEFIKLEGYNNVQVQWDGKAFKEMKNLRILIIEGSRFSTGLKHLPNSLRVLDWSCYPSPSLPSDFNPKRFEILLLPESCLQMLKPQNMLESLSVISLQDCKFLTDLPSLRDAPFLTTLRLDNCCNLVNIDESIGFLDKLRFLSASYCTKLXCIMLTSLETLDLGRCFSLESFPEVLGKMEKIRTIYLDCTGIDKLPLSIGNFVWLELLSLTECERLHQLPGSISIMPKVKVLVGYGHGAYQIFQEQLSSEVSPRAMLIGDSDLYLDVYYSYISPNNSIQVCSPDPLFHSDFNLLFPKLGREEDWLCFRRESSMHFSFRNKFPKIALCCSILLPLLKIIMVMNLKFRVFINDTLQFSALCNFILREWDTILWCDLEGKVEGVFSDEEWNKAEIVFELDFPMRRNSRNGNTRRSIGIGSLGWSLMGVYEEGNNKEDIEFKDPVSVFPLCNRQPPSSLPTSLYYVVSRGKP	1005

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium5663g00002	1005	Gene3D	Ribonuclease Inhibitor	495	690	IPR032675	-
	Vium5663g00002	1005	ProSiteProfiles	TIR domain profile.	16	186	IPR000157	GO:0007165
	Vium5663g00002	1005	SUPERFAMILY	L domain-like	543	904	-	-
	Vium5663g00002	1005	FunFam	Disease resistance protein (TIR-NBS-LRR class)	14	188	-	-
	Vium5663g00002	1005	Gene3D	Ribonuclease Inhibitor	691	779	IPR032675	-
	Vium5663g00002	1005	Gene3D	-	354	437	IPR042197	-
	Vium5663g00002	1005	Gene3D	-	10	185	IPR035897	-
	Vium5663g00002	1005	Pfam	TIR domain	18	187	IPR000157	GO:0007165
	Vium5663g00002	1005	PRINTS	Disease resistance protein signature	690	706	-	-
	Vium5663g00002	1005	PRINTS	Disease resistance protein signature	219	234	-	-
	Vium5663g00002	1005	PRINTS	Disease resistance protein signature	295	309	-	-
	Vium5663g00002	1005	PRINTS	Disease resistance protein signature	388	402	-	-
	Vium5663g00002	1005	SUPERFAMILY	"Winged helix" DNA-binding domain	424	530	IPR036390	-
	Vium5663g00002	1005	Gene3D	-	186	346	IPR027417	-
	Vium5663g00002	1005	SMART	till_3	17	159	IPR000157	GO:0007165
	Vium5663g00002	1005	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	779	IPR044974	GO:0006952
	Vium5663g00002	1005	Pfam	NB-ARC domain	202	426	IPR002182	GO:0043531
	Vium5663g00002	1005	SUPERFAMILY	Toll/Interleukin receptor TIR domain	10	162	IPR035897	-
	Vium5663g00002	1005	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	184	447	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium5663g00002	Vium-Chr5663	13869	18595	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium5663g00002	7	769	WRKY Transcription Factor Family	AT4G12020	34.347	8.44e-98	338

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium5663g00002	-		-	gmx:100797941	1360.9