Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5657g00002 ATGCCTGTCCTTGAAACACTTGGTGGTGCTCTTTTTGGTGCTGTTCTTCAGGTGCTATTTGACAAGCTCGATTCTCATCAAGTTCTCGGCTTCTTTCGTGGGAGAAATCTTGATGAGAAGCTACTGAAAAAGTTAAAGAGGAAGCTGATGGACGTCAATTCTGTGATAGATGATGCAGAACAAAAGCAGTTCACTAATTCATTGGTCAAAGAATGGCTTGATGAGGTTAGAGACGTCTTGTATGATGCAGAGGATCTGCTAGAGCAAATAGACTATGAATTCTCCAAGACAAAATTGGAAGCTGAATTCCAAACCAGCTCTAGCAAGGTACACAATTTTGAATCCAAGATCATAGCACTCCTTGATGATCTAGAATCTCTTTTGAACCAAAAGATTGTTAAAGATTACAAAATTTATAGTGGCGTTAGATCTGGGTTGGGTAATAAGGTGGCGGAGAAAAAAGTTGAGTCAACGTCGTTGGTGGCTGAAGAGGTTATTTATGGCAGAAATGAGGACAAAGAAATTATCTTTACTTGGCTGAGATCTGACACTAATGATAATAAGCTGTCTATACTTTCTATTGTGGGTATGGGTGGGATGGGTAAGACCACACTTGCTCAACATGTATACAATGATCCAAAGACAGAGGAAGCTAAATTTGAAGAAAAAGCTTGGGTTTGCGTTTCTGATGCATTTGATGCTTTGAGAGTATCCAAAGCAATTATTGGATCTTTCACTAACTCAAGAGATGACAGTGGAGACCTAGAAATGGTTCATGGAAAATTGAAAACAAGGTTGTTTGGAAAGAAGTTTCTTCTTGTTCTGGATGATGTTTGGAACGAAGACCGAAACCAATGGAAAGCATTACAAACTCCTCTTACGTTTGGAGCTAAAGGAAGTAAAATTCTAGTCACAACACGCAGTCACAAAGTTGCTTCTATCATGCAGTCAACCTACATACTCCAACTAAAGCAATTAGATGAAGATCACAGCTGGCAAACTTTTGCTAAACATGCATTCCAAGATGAAAACTCTAAGTTGAATTCTGAGTTAAAGGAGATTGGCATGAAGATAGTTGAAAAGTGCCAAGGATTACCTCTGGCCCTTGAAACAATAGGATGTGTTTTACAGTCAAAGTCATCCGTTTCAGAGTGGGAAGGTGTATTGACAAGCGAGATATGGGACTTAACAATAGAAGATAGTAAAATCGTCCCTACTTTGTTGTTGAGCTATTACCATCTTCCTTCTCATCTCAAGAGATGTTTTGCTTATTGTGCATTATTCCCCAAAGACCATAGGTTTGACAAAGAGAGCTTAATTTTGTTATGGATGGCTCAAAATTTTCTACATTGCTCTCAACAAAGCAAGTCTCCAGAAGAAGTAGGTGAAGACTACTTCAATGATCTAGTATCAAGGTCATTCTTTAAACAAATAACTTGGGACAAGGAAATATATTTTGTCATGCACGACCTTCTGAATGATTTAGCAAAATATGTTTCAGGTGAAATCTGCTACAGGTTAGGTGTTGATGGTGAAAAAGGAGTATCAAGGAAAACCCGTCATATATCATATGTAAGCGATCCTATTCAAGATTATACGAGTTTACGTGATGCTACACGGTTACGAACATTTATAACTTTTGGGTGGCGTCGTGAGCTGCCAATAGAAGAGTTAATCCCCAACTTTAAGTTCATACGGGTCTTATCATTGAGGTTGTGTTTTGAGGTGCCTGACACAATAGGCGATCTTATACATCTCCGTTCGTTGGATTTTTCGGGTAGCGCCATACGCAGACTTCCTGACTCAATCTGTTCACTCTATAACTTGCAAGAATTGAAACTAAATAATTGTTTCAAATTGAAGGAGCTGCCCTTGACTTTGCATGAGCTTACCAATTTGCGCCGCCTAGAACTTATGGGAACTACTTTAACGAAGGGTCCAATCGGTTTAGGAAAGTTGAAGAATCTTCACGTGTGGATAAACAATTTTGCGGTTGGAAAAAGTAGTGAGTTCAGTATTCAACAGTTAGGAGAACTTCATTTTCATGGAGAGCAGCTGTCAATTCAAAATCTTGAAAATATCTCAAATCCGTATGAGACGAATTTGAAGAATGAAACACATATTGTGACGCTGAGCTTACAATGGAATTTAGCGCGGAACAATGACGATTCGGTAAAAGAAAGAGAAGTACTTGAGAATCTGCAACCTTCCATACATTTGAAGCACTTATCAATCGATGGCTATGGTGGCACACAATTTCCCCGTTGGTTATCCAATAATTCTCTATCGAATGTGGTGTCCTTAACCTTGAATAACTGTAAACATTGCCTATGGTTGCCTTGCCTTGGACTTTTGACATTTCTGAAGAACTTGAGAATTGATGGCCTTGATTGGATAGGAAGGATAGATGCTGATTTCTACGGGGATAGCTCTTCTGCATTTGCATCCTTGAAAAGGTTGAGCTTTATTGATATGAAGGAATGGGAAGAATGGCAGTGCGTGACGGGTGCTTTTCCAAGTCTTAAAAGTCTTTTTCTGGCGAATTGTCCCAAGCTGAAAGAATTGCCAAACATACTTTGTCATTTAAAGAAATTTATTATACACGAATGCGGCCAACTTGGGGCTCCGATCACCAGGGCCGTCGAGATTCAATGTGTGAATACGAGGCCAAACATATTTGATACCCTTGAATACTTGCCTTTTTCTTTTGGTCCAGGCATCAGTATTCCCATTAGCAATTGGTACCATTCCCTTGTAGAATTGCGTATCAGAGATGATTGTGACTCTCTCACTACCTTTCCTTTAGATTTGTTCCCAAAACTCCGCGACCTTTGTTTATCCGGGTGTCGCAATCTACAGATGATATCGCAGGGGCACCCTCACAATCGTTTGGAGAATTTGTTCATTGATCAATGCTCTGAATTTGAATCATTTCCCAATGAAGGATTATTTGCACCTCAGCTAGTGTCATTGATTATTGCAGGATTGGAGAAATTGAAGTCAATGCCTAAATGCATGTCTGCCCTTCTTCCATCTCTTAATAATCTGTACATAAGCAATTGTCCAGCGCTGGAGTTGTCCGAGGAATGTTTGCCATCAAATGTAAAAGAAATGTTTGTCGAGAATTGCTCCAAAGTTCTGGCCTCCCTAAAGGGCGCTTGGGGAACCAACCCTTCCTTAATAGTCTTGAGAATTGGCAAGGTGGATTTGGAGTGTTTTCCGGGTGAAGGTTTGCTCCCACTTTCTCTTGGTCGTCTAGAAATATATGATTGTCCAAATCTTAAGAAACTGGACTACAGGGGTCTCTGTCACCTCTCCTCTCTTCGGATATTGATTCTTCGTAACTGTCCTGTACTCCAATGCTTGCCAGAGGAGGGTCTACCAAAATCCATTTCAGACCTCGCAATTTGTGATTGTTTATTGCTCAAACAGCGGTGCCAGAAACAAGAAAGTGAAGATTGGGAAAAGATTGCTCACATTAAATCCATATCGATTGATGATTACTAA 3507 0.3989 MPVLETLGGALFGAVLQVLFDKLDSHQVLGFFRGRNLDEKLLKKLKRKLMDVNSVIDDAEQKQFTNSLVKEWLDEVRDVLYDAEDLLEQIDYEFSKTKLEAEFQTSSSKVHNFESKIIALLDDLESLLNQKIVKDYKIYSGVRSGLGNKVAEKKVESTSLVAEEVIYGRNEDKEIIFTWLRSDTNDNKLSILSIVGMGGMGKTTLAQHVYNDPKTEEAKFEEKAWVCVSDAFDALRVSKAIIGSFTNSRDDSGDLEMVHGKLKTRLFGKKFLLVLDDVWNEDRNQWKALQTPLTFGAKGSKILVTTRSHKVASIMQSTYILQLKQLDEDHSWQTFAKHAFQDENSKLNSELKEIGMKIVEKCQGLPLALETIGCVLQSKSSVSEWEGVLTSEIWDLTIEDSKIVPTLLLSYYHLPSHLKRCFAYCALFPKDHRFDKESLILLWMAQNFLHCSQQSKSPEEVGEDYFNDLVSRSFFKQITWDKEIYFVMHDLLNDLAKYVSGEICYRLGVDGEKGVSRKTRHISYVSDPIQDYTSLRDATRLRTFITFGWRRELPIEELIPNFKFIRVLSLRLCFEVPDTIGDLIHLRSLDFSGSAIRRLPDSICSLYNLQELKLNNCFKLKELPLTLHELTNLRRLELMGTTLTKGPIGLGKLKNLHVWINNFAVGKSSEFSIQQLGELHFHGEQLSIQNLENISNPYETNLKNETHIVTLSLQWNLARNNDDSVKEREVLENLQPSIHLKHLSIDGYGGTQFPRWLSNNSLSNVVSLTLNNCKHCLWLPCLGLLTFLKNLRIDGLDWIGRIDADFYGDSSSAFASLKRLSFIDMKEWEEWQCVTGAFPSLKSLFLANCPKLKELPNILCHLKKFIIHECGQLGAPITRAVEIQCVNTRPNIFDTLEYLPFSFGPGISIPISNWYHSLVELRIRDDCDSLTTFPLDLFPKLRDLCLSGCRNLQMISQGHPHNRLENLFIDQCSEFESFPNEGLFAPQLVSLIIAGLEKLKSMPKCMSALLPSLNNLYISNCPALELSEECLPSNVKEMFVENCSKVLASLKGAWGTNPSLIVLRIGKVDLECFPGEGLLPLSLGRLEIYDCPNLKKLDYRGLCHLSSLRILILRNCPVLQCLPEEGLPKSISDLAICDCLLLKQRCQKQESEDWEKIAHIKSISIDDY 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5657g00002 1168 Gene3D - 17 129 - -
Vium5657g00002 1168 Gene3D Ribonuclease Inhibitor 545 648 IPR032675 -
Vium5657g00002 1168 Gene3D - 411 498 IPR036388 -
Vium5657g00002 1168 PRINTS Disease resistance protein signature 191 206 - -
Vium5657g00002 1168 PRINTS Disease resistance protein signature 836 852 - -
Vium5657g00002 1168 PRINTS Disease resistance protein signature 362 376 - -
Vium5657g00002 1168 PRINTS Disease resistance protein signature 265 279 - -
Vium5657g00002 1168 FunFam Probable disease resistance protein At1g61300 148 319 - -
Vium5657g00002 1168 Gene3D Ribonuclease Inhibitor 1035 1158 IPR032675 -
Vium5657g00002 1168 Gene3D Ribonuclease Inhibitor 891 1034 IPR032675 -
Vium5657g00002 1168 Gene3D Ribonuclease Inhibitor 668 873 IPR032675 -
Vium5657g00002 1168 Pfam Rx N-terminal domain 13 104 IPR041118 -
Vium5657g00002 1168 Coils Coil 1165 1168 - -
Vium5657g00002 1168 Gene3D - 146 321 IPR027417 -
Vium5657g00002 1168 SUPERFAMILY L domain-like 487 864 - -
Vium5657g00002 1168 PANTHER DISEASE RESISTANCE PROTEIN RP 42 852 IPR044974 GO:0006952
Vium5657g00002 1168 FunFam Probable disease resistance protein At1g63360 411 498 - -
Vium5657g00002 1168 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 425 IPR027417 -
Vium5657g00002 1168 Coils Coil 110 130 - -
Vium5657g00002 1168 Gene3D - 325 410 IPR042197 -
Vium5657g00002 1168 Pfam NB-ARC domain 172 389 IPR002182 GO:0043531
Vium5657g00002 1168 Coils Coil 42 62 - -
Vium5657g00002 1168 SUPERFAMILY L domain-like 892 1158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5657g00002 Vium-Chr5657 4821 8594 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5657g00002 192 386 WRKY Transcription Factor Family AT5G45050 27.907 1.64e-08 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5657g00002 - - vun:114168932 1568.9