Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5654g00001 ATGGAGAACACATTGAATAGGTTTGCACCATCATCTGATCCATCACTGACGATCAAGTTTTATGAGAGAACTCCTGAGCAGCAAGCATCATTGGGATACCTTGTTGATTCCACACAGATTGAAGGAACTCGTGTTGACCCCCTTGAAGGGGGAGAAGGTGTGCCTACTGATCAAGTAAGGACAGAACCACATGGATCAATAGGGGCGACAGCTGGGCATCGAGCCATTGCTCAGAGTAACAGTGCAGAAATGGCTGAAGCCTTGTTTCGATATACGGCACCAGAAGAGGTGATGACTTTCCCATCTACTTGTGGTGCCTGTGCTGCCAAGTGTGAGACTCGAATGTTTGTCACCAATATTCCTTACTTTCAAGAAGTAATTGTTATGGCATCCACATGTGATGTCTGTGGCTACCGCAACTCTGAGTTGAAACCTGGTGGACGAATTCCTGAAAAGGGGAAAAAAATTACTCTTTCTGTGAAGAATATCAATGACCTTAGCCGTGATGTAATAAAGTCTGATACTGCAAGTGTAAAAGTTCCGGAAGTTGACTTGGAGCTGGCAAGCGGAACCCTTGGAGGAATAGTTACAACTGTTGAAGGTTTAATCACAAGAATTGGTGAAAGTAAGTATCCTTTCTATCAATCACATAAACTAATGGAGAACACATTGAATAGGTTTGCACCATCATCTGATCCATCACTGACGATCAAGTTTTATGAGAGAACTCCTGAGCAGCAAGCATCATTGGGATACCTTGTTGATTCCACACAGATTGAAGGAACTCGTGTTGACCCCCTTGAAGGGGGAGAAGGTGTGCCTACTGATCAAGTAAGGACAGAACCACATGGATCAATAGGGGCGACAGCTGGGCATCGAGCCATTGCTCAGAGTAACAGTGCAGAAATGGCTGAAGCCTTGTTTCGATATACGGCACCAGAAGAGGTGATGACTTTCCCATCTACTTGTGGTGCCTGTGCTGCCAAGTGTGAGACTCGAATGTTTGTCACCAATATTCCTTACTTTCAAGAAGTAATTGTTATGGCATCCACATGTGATGTCTGTGGCTACCGCAACTCTGAGTTGAAACCTGGTGGACGAATTCCTGAAAAGGGGAAAAAAATTACTCTTTCTGTGAAGAATATCAATGACCTTAGCCGTGATGTAATAAAGTCTGATACTGCAAGTGTAAAAGTTCCGGAAGTTGACTTGGAGCTGGCAAGCGGAACCCTTGGAGGAATAGTTACAACTGTTGAAGGTTTAATCACAAGAATTGGTGAAAGCCTTGAGAGGGTCCATGGCTTTACTTTTGGAGATAGTCTTGATGAAAATAGTAGAAGCAAGTGGATAGACTTTAAAACAAGACTAAACAAGCTTCTTAGCTTAGAAGAAGCTTGGACTCTAATTCTTGATGATGCATTAGCCAATTCTTTTATAGCACCTGCAACTGATGATCTGAAAGAGGACAAACAATTAGCATGTAAGTTTTCCAGCTCTGACATAAATAAAGCTATACTTTGTGTTGATAAAGTTCACATTTTCTGA 1545 0.4265 MENTLNRFAPSSDPSLTIKFYERTPEQQASLGYLVDSTQIEGTRVDPLEGGEGVPTDQVRTEPHGSIGATAGHRAIAQSNSAEMAEALFRYTAPEEVMTFPSTCGACAAKCETRMFVTNIPYFQEVIVMASTCDVCGYRNSELKPGGRIPEKGKKITLSVKNINDLSRDVIKSDTASVKVPEVDLELASGTLGGIVTTVEGLITRIGESKYPFYQSHKLMENTLNRFAPSSDPSLTIKFYERTPEQQASLGYLVDSTQIEGTRVDPLEGGEGVPTDQVRTEPHGSIGATAGHRAIAQSNSAEMAEALFRYTAPEEVMTFPSTCGACAAKCETRMFVTNIPYFQEVIVMASTCDVCGYRNSELKPGGRIPEKGKKITLSVKNINDLSRDVIKSDTASVKVPEVDLELASGTLGGIVTTVEGLITRIGESLERVHGFTFGDSLDENSRSKWIDFKTRLNKLLSLEEAWTLILDDALANSFIAPATDDLKEDKQLACKFSSSDINKAILCVDKVHIF 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5654g00001 514 NCBIfam ZPR1 zinc finger domain 322 481 IPR004457 GO:0008270
Vium5654g00001 514 NCBIfam ZPR1 zinc finger domain 103 208 IPR004457 GO:0008270
Vium5654g00001 514 MobiDBLite consensus disorder prediction 44 67 - -
Vium5654g00001 514 FunFam Zinc finger protein zpr1 367 508 - -
Vium5654g00001 514 SMART zpr1 102 238 IPR004457 GO:0008270
Vium5654g00001 514 SMART zpr1 321 481 IPR004457 GO:0008270
Vium5654g00001 514 MobiDBLite consensus disorder prediction 263 286 - -
Vium5654g00001 514 Gene3D ZPR1, A/B domain 367 500 IPR042451 -
Vium5654g00001 514 Gene3D ZPR1, A/B domain 148 217 IPR042451 -
Vium5654g00001 514 Gene3D ZPR1, zinc finger domain 92 147 IPR042452 -
Vium5654g00001 514 Gene3D ZPR1, zinc finger domain 311 366 IPR042452 -
Vium5654g00001 514 PANTHER ZINC FINGER PROTEIN ZPR1 225 493 IPR040141 -
Vium5654g00001 514 FunFam Zinc finger protein ZPR1 93 147 - -
Vium5654g00001 514 FunFam Zinc finger protein ZPR1 312 366 - -
Vium5654g00001 514 Pfam ZPR1 zinc-finger domain 321 479 IPR004457 GO:0008270
Vium5654g00001 514 Pfam ZPR1 zinc-finger domain 102 208 IPR004457 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5654g00001 74 492 C2H2 Transcription Factor Family AT5G22480 52.632 9.86e-158 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5654g00001 K06874 - gmx:100798741 529.25