Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium564g00001 ATGCAAAATCTCCCTACCCTTTCTCTCGTTCTCTTATTCTGGTGTGCCACTGCACATGGGTTCGGCGCCATGGGGCCAATATCTGCTTCATTCGCAAAAGACGAGGTTTTCTGCGCCATTGATGCTAGCGGGAAGCAAGACGTCATTTGCTGGGGGAACAACGCCACGTCACCGTCTCTGCCCTCCGTTACGAACGCCGTTCCTTCCATGTCAGCACTCTCCGGCGGGGAAGGCTTCCTCTGCGGCATTTTAGCGAACACCTCGCAAGCGTTCTGCTGGGGTGCTGTGACGAAACCCAGCACAGATCTCGTCCTCGTGCCGCCGGCGTACCGGAACACGGCTTATTCCCACATCGCCGCTGGCAAGAGCCATGTGTGCGCTGTTCGAGGATCCTACTACTCCGATCACGATTCGGGCTCCGTGGATTGCTGGGAAATCACGACGACCGCAAACAAAACGTTGACAGCGAAACAGAGTGACTTGTATTTCAACCAAGCCGTGATGAATCTGGAGGTGAAGAGGGTTGTTTCTGGGGAAGGGTTCACCTGCGGCGAGGTAAGAGACGGTGGACTCATATGTTGGGGACCTAACTCTGGAGGGATAAGAGTTTCCAATGTTTCCGAGAGTTTCGCGGTTTTAGCGGCTGGTCGGAGGGCCGTGTGCGGTGTTTTCAACGTTTCCGGCCAGTTGAAATGCTGGGGCGACCCGGGTTCGTTTTCGGATCCTCCACTGGATTCGGTTCGGCTGGTGTCCCTAACTGCTGGGGCTAACCATTTCTGCGGCATTAGAATGGATAACCATGAAGTGGAGTGTTGGGGAGATTTGAACTCTTCGGTGATTCCTCGAGGGAACGGTTTCATGGCACTTGCTTCTTCGGATTTAACCACGTGTGGGATCAGGGAAGATGATCTTCTTCTGGATTGTTGGATGGTGAATGCTTTGAAAGCCGATTTTGATCCTCCTTTGGAGCTTTCGAGCCCTGGACTGTGCAGGGCTAGTTCCTGTGGGGTCGGTGAGTTTGCTTTCAATGCGAGTATGCTTAACGAGGTAGCTTTGACTAGCCTCTGTGTTAGAGAGGATTTGAGGATTTGTTCACCTTGTGGCTCAAATTGTTCTAAAGGGTTCTTCTTGTCAAGTTCATGTACTAAAAATGCTGACAGAGTCTGCACCTCTTGTTCTCTTTGTCAGAACAGCTCTTGTTTTAGTGCCTGTGGACTTCATTCCCCATCAGGTCTGCATATGCATTGGCACTGGCATCATTTGCGTAAATGGATGGTTATAGTTGGGTGCTCAGTGTTGGGGGTTTTGACAATTTTGCTTTGTGGGTGTCTCTTTTCGGTCAGAAAGAAGACAAAGAAACAATCCAAGTCTGGCATGGGGAAACCAGAGCAAGAGGATGACCATGTCAATGTTGCTCTTCAATCAACACCTTCTGTTAATTCTTGTCCCGGGGCTCCTCAGGTTTTCAGGCTTTCTGAACTGAAGGATGCTACCAATGGGTTTAAGGAGTTTAATGAACTTGGGAGAGGAAGTTATGGGTTTGTGTACAAAGCCATGTTGGCAGATGGGAGAGTGGTTGCTGTTAAAAGAGCAAATGCTGCTACCATAATCCACACCAATAATCGTAATTTTGAAATGGAACTAGAAATTCTCTGCAAAATTCGCCATGGTAATATCGTTAATCTGTTGGGGTACTGCGCGGAGATGGGGGAGAGGTTGCTTGTTTACGAGTATATGCCTCATGGAACGCTTTATGATCACCTCCATGGTGGTCTTTCTCCGCTTAATTGGAGCCTCAGATTGAAGATAGCGATGCAAGCTGCGAAGGGGCTTGAGTATCTTCACAAGGAACTTGTGCCTCCAATTGTGCATAAGGATCTAAAAAGTTCGAACATTCTTTTGGATTCGGAGTGGGGAGCAAGGATTTCGGACTTTGGACTTCTTGCTTCGAGTGACAAAGATTTGAATGGAGACTTAGAAAGCGATGTTTACGATTTTGGGATTGTGATACTAGAGATTCTGAGTGGAAGAAAGGCTTATGACAGAGATTACACTCCACCCAACATGGTTGAGTGGGCAGTGCCTTTGATTAAACAAGGGAAGGCTGCTGCTACAATTGATAGGTATGTGGCTCTTCCAAGAAACGTTGAACCTTTGCTTAAGCTTGCTGATATAGCAGAACTTGCAGTGAGAGAGAATCCAAGTGAACGACCACCTATGTCAGACATAGCATCTTGGTTGGAGCAAATTGTGAAGGACGGATTGATCTTATAA 2274 0.4824 MQNLPTLSLVLLFWCATAHGFGAMGPISASFAKDEVFCAIDASGKQDVICWGNNATSPSLPSVTNAVPSMSALSGGEGFLCGILANTSQAFCWGAVTKPSTDLVLVPPAYRNTAYSHIAAGKSHVCAVRGSYYSDHDSGSVDCWEITTTANKTLTAKQSDLYFNQAVMNLEVKRVVSGEGFTCGEVRDGGLICWGPNSGGIRVSNVSESFAVLAAGRRAVCGVFNVSGQLKCWGDPGSFSDPPLDSVRLVSLTAGANHFCGIRMDNHEVECWGDLNSSVIPRGNGFMALASSDLTTCGIREDDLLLDCWMVNALKADFDPPLELSSPGLCRASSCGVGEFAFNASMLNEVALTSLCVREDLRICSPCGSNCSKGFFLSSSCTKNADRVCTSCSLCQNSSCFSACGLHSPSGLHMHWHWHHLRKWMVIVGCSVLGVLTILLCGCLFSVRKKTKKQSKSGMGKPEQEDDHVNVALQSTPSVNSCPGAPQVFRLSELKDATNGFKEFNELGRGSYGFVYKAMLADGRVVAVKRANAATIIHTNNRNFEMELEILCKIRHGNIVNLLGYCAEMGERLLVYEYMPHGTLYDHLHGGLSPLNWSLRLKIAMQAAKGLEYLHKELVPPIVHKDLKSSNILLDSEWGARISDFGLLASSDKDLNGDLESDVYDFGIVILEILSGRKAYDRDYTPPNMVEWAVPLIKQGKAAATIDRYVALPRNVEPLLKLADIAELAVRENPSERPPMSDIASWLEQIVKDGLIL 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium564g00001 757 ProSiteProfiles Protein kinase domain profile. 501 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium564g00001 757 FunFam Serine/threonine-protein kinase-like protein CCR1 579 655 - -
Vium564g00001 757 Gene3D Phosphorylase Kinase; domain 1 465 578 - -
Vium564g00001 757 Gene3D - 166 319 IPR009091 -
Vium564g00001 757 Gene3D - 16 165 IPR009091 -
Vium564g00001 757 FunFam Serine/threonine-protein kinase-like protein CCR1 656 754 - -
Vium564g00001 757 SUPERFAMILY Protein kinase-like (PK-like) 477 748 IPR011009 -
Vium564g00001 757 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Vium564g00001 757 FunFam serine/threonine-protein kinase-like protein CCR1 470 578 - -
Vium564g00001 757 SUPERFAMILY RCC1/BLIP-II 25 277 IPR009091 -
Vium564g00001 757 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 334 389 IPR001368 GO:0005515
Vium564g00001 757 ProSitePatterns Protein kinases ATP-binding region signature. 507 529 IPR017441 GO:0005524
Vium564g00001 757 Gene3D Transferase(Phosphotransferase) domain 1 656 754 - -
Vium564g00001 757 Gene3D Transferase(Phosphotransferase) domain 1 579 655 - -
Vium564g00001 757 Pfam Protein tyrosine and serine/threonine kinase 505 651 IPR001245 GO:0004672|GO:0006468
Vium564g00001 757 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 7 751 - -
Vium564g00001 757 SMART serkin_6 501 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium564g00001 Vium-Chr564 2727 5479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium564g00001 4 749 Receptor kinase-like Gene Family AT3G59420 30.273 2.38e-106 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vium564g00001 PK_Tyr_Ser-Thr 2.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium564g00001 - - gmx:100802259 1373.61