Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5648g00020 ATGGAGATGGAACGGGTTTTCGAATTTCCTCACACTCACATGGATCGACGCCCGAGAAAGAGAGCACGGTTGGGCTGGGACATTCCTGAGGCTTCTAAGGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGAGACTATTTCCAGCTATGCTCCTTCAAGTGGTCCCTCAGAACATAGCACTAGTTCTCTATTTGTTAAGGCAGTTGCTCAAAATGGTTCTCCCTCTTGGCGAGACGATGACAAAGATGGACATTACATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAGGATCCACAGCAAAATGGGTGAAGGAACTTTTGGGAAAGTATTAGAATGTTGGGACAGAGAAAGGAAAGACATGGTTGCAATAAAAATTATTCGAGGGATAAAGAAGTATAGAGAAGCAGCCATGATAGAAATTCAGGTGTTGGAACAGCTTGGTAAACATGACAAAGGAGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACAATTTTCTTCGGAAAAACAATTATCGCTCCTTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATTCATGCATGACTTGCGGATGATTCATACTGACCTCAAGCCGGAAAACATACTACTAGTGTCACCAGAGTATGTCAAAGTTCCTGACTACAAGAGCACAACCAGATCTCCTGGTTCCTATTTCAAAAGGGTTCCCAAATCAAGTGCTATAAAGCTTATTGATTTCGGCAGCACCACTTTTGAGAGAGAAGATCAGAATTACATTGTATCAACTCGTCATTATAGAGCTCCTGAAGTTATCCTTGGACTTGGCTGGAGCTATCCGTGTGATATTTGGAGTGTGGGTTGTATATTGGTTGAGTTATGTACGGGAGAAGCTTTATTTCAGACTCATGAAAATTTAGAACATCTTGCAATGATGGAAAGGGTTCTTGGTCCATTACCACTGCACATGTTGAAGAGAGTCGACCGACATGCTGAGAAGTATGTTAGGAGAGGTAGATTACATTGGCCTGATGGTGCGACTTCAAGGGATAGTATCAAAGCTGTAATGAAGCTTCCAAGGCTACAGCAATTTTTCTCCGCAAATACATGCAGAACCTTATAA 1182 0.4179 MEMERVFEFPHTHMDRRPRKRARLGWDIPEASKAQVGLFCGQDVETISSYAPSSGPSEHSTSSLFVKAVAQNGSPSWRDDDKDGHYMFALGENLTSRYRIHSKMGEGTFGKVLECWDRERKDMVAIKIIRGIKKYREAAMIEIQVLEQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYNFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSPEYVKVPDYKSTTRSPGSYFKRVPKSSAIKLIDFGSTTFEREDQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPLHMLKRVDRHAEKYVRRGRLHWPDGATSRDSIKAVMKLPRLQQFFSANTCRTL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5648g00020 393 Gene3D Transferase(Phosphotransferase) domain 1 152 377 - -
Vium5648g00020 393 FunFam Serine/threonine-protein kinase AFC2 85 178 - -
Vium5648g00020 393 FunFam Serine/threonine-protein kinase AFC2 174 392 - -
Vium5648g00020 393 CDD PKc_CLK 85 380 - -
Vium5648g00020 393 ProSiteProfiles Protein kinase domain profile. 98 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5648g00020 393 SUPERFAMILY Protein kinase-like (PK-like) 85 366 IPR011009 -
Vium5648g00020 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Vium5648g00020 393 Pfam Protein kinase domain 98 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5648g00020 393 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
Vium5648g00020 393 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 386 - -
Vium5648g00020 393 SMART serkin_6 98 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5648g00020 Vium-Chr5648 133841 137595 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5648g00020 263 363 EF-hand Containing Proteins AT5G22840 39.130 5.11e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vium5648g00020 Pkinase 3.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5648g00020 K08287 - gmx:100804452 733.406