Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5648g00019 ATGACAAAGGAGGCAATCGTCATGCATGACTTGCGGATGATTCATACTGACCTCAAGCCGGAAAACATACTACTAGTGTCACCAGAGTATGTCAAAGTTCCTGACTACAAGAGCACAACCAGATCTCCTGGTTCCTATTTCAAAAGGGTTCCCAAATCAAGTGCTATAAAGCTTATTGATTTCGGCAGCACCACTTTTGAGAGAGAAGATCAGAATTACATTGTATCAACTCGTCATTATAGAGCTCCTGAAGTTATCCTTGGACTTGGCTGGAGCTATCCGTGTGATATTTGGAGTGTGGGTTGTATATTGGTTGAGTTATGTACGGGAGAAGCTTTATTTCAGACTCATGAAAATTTAGAACATCTTGCAATGATGGAAAGGGTTCTTGGTCCATTACCACTGCACATGTTGAAGAGAGTCGACCGACATGCTGAGAAGTATGTTAGGAGAGGTAGATTACATTGGCCTGATGGTGCGACTTCAAGGGATAGTATCAAAGCTGTAATGAAGCTTCCAAGGCTACAGAACCTTATAATGCACCATGTGGACCATTCAGCTGGCGATGTCATACATCTCTTGCAGGGGTTACTTAGGTTCGACCCTTCTGAAAGGCTTACAGCCAAAGAAGCTCTTAGACATTCCTTCTTTATGAGAGACCACTTTAGGAGATAA 675 0.4267 MTKEAIVMHDLRMIHTDLKPENILLVSPEYVKVPDYKSTTRSPGSYFKRVPKSSAIKLIDFGSTTFEREDQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPLHMLKRVDRHAEKYVRRGRLHWPDGATSRDSIKAVMKLPRLQNLIMHHVDHSAGDVIHLLQGLLRFDPSERLTAKEALRHSFFMRDHFRR 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5648g00019 224 Gene3D Transferase(Phosphotransferase) domain 1 7 217 - -
Vium5648g00019 224 SUPERFAMILY Protein kinase-like (PK-like) 8 221 IPR011009 -
Vium5648g00019 224 ProSitePatterns Serine/Threonine protein kinases active-site signature. 13 25 IPR008271 GO:0004672|GO:0006468
Vium5648g00019 224 ProSiteProfiles Protein kinase domain profile. 1 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5648g00019 224 Pfam Protein kinase domain 8 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5648g00019 224 SMART serkin_6 1 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5648g00019 224 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 8 220 - -
Vium5648g00019 224 FunFam Serine/threonine-protein kinase AFC2 2 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5648g00019 Vium-Chr5648 133345 135912 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5648g00019 57 217 EF-hand Containing Proteins AT5G22840 32.584 1.14e-18 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vium5648g00019 Pkinase 5.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5648g00019 K08287 - gmx:100804452 417.542