Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5648g00017 ATGGGTGAAGGAACTTTTGGGAAAGTATTAGAATGTTGGGACAGAGAAAGGAAAGACATGGTTGCAATAAAAATTATTCGAGGGATAAAGAAGTATAGAGAAGCAGCCATGATAGAAATTCAGGTGTTGGAACAGCTTGGTAAACATGACAAAGGAGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACAATTTTCTTCGGAAAAACAATTATCGCTCCTTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATTCATGCATGACTTGCGGATGATTCATACTGACCTCAAGCCGGAAAACATACTACTAGTGTCACCAGAGTATGTCAAAGTTCCTGACTACAAGAGCACAACCAGATCTCCTGGTTCCTATTTCAAAAGGGTTCCCAAATCAAGTGCTATAAAGCTTATTGATTTCGGCAGCACCACTTTTGAGAGAGAAGATCAGAATTACATTGTATCAACTCGTCATTATAGAGCTCCTGAAGTTATCCTTGGACTTGGCTGGAGCTATCCGTGTGATATTTGGAGTGTGGGTTGTATATTGGTTGAGTTATGTACGGGAGAAGCTTTATTTCAGACTCATGAAAATTTAGAACATCTTGCAATGATGGAAAGGGTTCTTGGTCCATTACCACTGCACATGTTGAAGAGAGTCGACCGACATGCTGAGAAGTATGTTAGGAGAGGTAGATTACATTGGCCTGATGGTGCGACTTCAAGGGATAGTATCAAAGCTGTAATGAAGCTTCCAAGGCTACAGAACCTTATAATGCACCATGTGGACCATTCAGCTGGCGATGTCATACATCTCTTGCAGGGGTTACTTAGGTTCGACCCTTCTGAAAGGCTTACAGCCAAAGAAGCTCTTAGACATTCCTTCTTTATGAGAGACCACTTTAGGAGATAA 984 0.4106 MGEGTFGKVLECWDRERKDMVAIKIIRGIKKYREAAMIEIQVLEQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYNFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSPEYVKVPDYKSTTRSPGSYFKRVPKSSAIKLIDFGSTTFEREDQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPLHMLKRVDRHAEKYVRRGRLHWPDGATSRDSIKAVMKLPRLQNLIMHHVDHSAGDVIHLLQGLLRFDPSERLTAKEALRHSFFMRDHFRR 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5648g00017 327 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 323 - -
Vium5648g00017 327 CDD PKc_CLK 1 320 - -
Vium5648g00017 327 ProSiteProfiles Protein kinase domain profile. 1 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5648g00017 327 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
Vium5648g00017 327 Pfam Protein kinase domain 1 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5648g00017 327 Gene3D Transferase(Phosphotransferase) domain 1 49 320 - -
Vium5648g00017 327 SUPERFAMILY Protein kinase-like (PK-like) 2 324 IPR011009 -
Vium5648g00017 327 FunFam Serine/threonine-protein kinase AFC2 71 320 - -
Vium5648g00017 327 Gene3D Phosphorylase Kinase; domain 1 1 75 - -
Vium5648g00017 327 SMART serkin_6 2 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5648g00017 Vium-Chr5648 133345 137594 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5648g00017 1 320 Core Cell Cycle Gene Families AT1G76540 25.982 1.32e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vium5648g00017 Pkinase 3.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5648g00017 K08287 - gmx:100804452 636.336