Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5648g00014 ATGGAGATGGAACGCGTTTTCGAATTTCCCCATTCTCATATGGATCGGCGACCGAGAAAGAGAGCGAGGTTGGGCTGGGACATTCCTGAGGTCCCTAAGGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGGCTATTTCAAGCTATGCTCCTTCAAGGGGTCCCTCAGAACATACCACTTGTTCCCTATTTGTTAAGGCTGTTGCTCAAAATGGTTCTCCCCCTTGGCGAGATGATGACAAAGATGGACATTACATGTTTGCGCTTGGAGATAATTTAACTTCTCGCTATAAGATCCATAGCAAAATGGGTGAAGGAACTTTTGGGCAGGTCTTAGAATGCTGGGACCGAGAAAGGAAGGAAATGGTTGCGATTAAAATTGTCCGTGGGATAAAGAAGTATCGAGAAGCAGCCATGATAGAAATTGAGGTGCTTCAACAGCTTGGTAAACATGACAAAGGAGGGAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGCGAGATTGGCAGACAACTATTGGAATGTATAGCATTCATGCATGATTTGCGGATGATTCATACTGACCTGAAGCCTGAAAATATATTACTAGTTTCGCCAGAGTATGTCAAAGTGCCTGACTACAAGAGTTCGTCTCGATCACCAAGTACCTATTTCAAGAGAGTTCCCAAATCTAGCGCCATAAAGGTAATTGATTTTGGCAGCACCACTTACGAACGTGATGATCAGACTTACATTGTATCAACTCGTCATTATAGGGCGCCTGAAGTTATCCTTGGACTCGGCTGGAGCTATCCATGCGATATATGGAGTGTAGGATGTATATTGGTTGAGTTATGCACGGGCGAAGCATTATTCCAGACTCATGAAAATTTAGAACATCTTGCTATGATGGAAAGGGTACTTGGTCCCTTACCGCAGCACATGTTGAAGAGAGTCGACCGAAATGCGGAGAAGTATGTTAGGAGGGGTAGATTAGACTGGCCTGAGGGTGCAACCTCGCGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGTTACAGAACCTTATAATGCAGCATGTGGATCATTCAGCAGGCGATCTCATCCATCTGTTGCAGGGATTACTTAGATTTGATCCCTCTGAAAGACTTACAGCCAAGGAAGCCCTTAGATATCCCTTCTTTATGAGAGATCACTTCAGGAGATAA 1293 0.4377 MEMERVFEFPHSHMDRRPRKRARLGWDIPEVPKAQVGLFCGQDVGAISSYAPSRGPSEHTTCSLFVKAVAQNGSPPWRDDDKDGHYMFALGDNLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSPEYVKVPDYKSSSRSPSTYFKRVPKSSAIKVIDFGSTTYERDDQTYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRNAEKYVRRGRLDWPEGATSRESIKAVMKLPRLQNLIMQHVDHSAGDLIHLLQGLLRFDPSERLTAKEALRYPFFMRDHFRR 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5648g00014 430 Pfam Protein kinase domain 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5648g00014 430 Gene3D Transferase(Phosphotransferase) domain 1 152 423 - -
Vium5648g00014 430 SMART serkin_6 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5648g00014 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Vium5648g00014 430 FunFam Serine/threonine-protein kinase AFC2 174 423 - -
Vium5648g00014 430 CDD PKc_CLK 85 423 - -
Vium5648g00014 430 SUPERFAMILY Protein kinase-like (PK-like) 85 427 IPR011009 -
Vium5648g00014 430 FunFam Serine/threonine-protein kinase AFC2 85 178 - -
Vium5648g00014 430 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 426 - -
Vium5648g00014 430 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
Vium5648g00014 430 ProSiteProfiles Protein kinase domain profile. 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5648g00014 Vium-Chr5648 121095 124909 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5648g00014 103 423 Core Cell Cycle Gene Families AT1G76540 25.672 6.92e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vium5648g00014 Pkinase 1.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5648g00014 K08287 - gmx:100804452 851.277