Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5648g00010 AACGGCCTCTTCGTCACTCTCGCCACCCCTCCCTCCATCTTCTCCCACTGTCTCCCCCCGTCATGCTGGACCCCGGAGGAAACCTCCGCCCTCATCGATGCCTACCGCGACAAGTGGTACTCCCTCGGCCGCACAAACCTCAAAGCCATCCACTGGCAAGAGGTCGCCGATGTCGTCACTGCCCAGTGTCCCAACGCTTCCACCACTGCCAAAACCGCCGTCCAGTGCCGCCACAAAATGGAAAAGCTCCGCAAACGCTACCGCACCGAAATCCAATGCCTCCGCTCCCTCCCTCTCCCTCGCCTCATCAACAACTCCACCACCGCTTCACCCTCCTCCTGGGTTCACTTCAAATCCATGGATTCCATGGAAAAAGGCCCCAACAAACCCCACACCGACACCACCGCTACCACCAACCCCAACACCCCCACCAACAACCCCAATTTCCCCGACGACGACCCTGTTGAGAGGTTCACTGCTGTTGGGACTCGCATGCCTAAAGGAGTTCTTCTTGTTGGTCCTCCAGGAACTGGGAAGACCCCGTTGGCCAAGGCTATTGCTGGTGAAGCTGGTGTTCCATTTTTTTTAATATTTGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGCTTCTCGAGTTCGTGATTTGTTCATGAAGGCCAAAGAGAACGCCCCTTGCATTGTCTTTGTTGATGAAATTGATGCTGTTGGAAGACAAAGAGGAACTGGAATTGGTGGAGGGAATGATGAAAGAGAGCAGACCCTCAACCAACTTTTGACATAA 786 0.5394 NGLFVTLATPPSIFSHCLPPSCWTPEETSALIDAYRDKWYSLGRTNLKAIHWQEVADVVTAQCPNASTTAKTAVQCRHKMEKLRKRYRTEIQCLRSLPLPRLINNSTTASPSSWVHFKSMDSMEKGPNKPHTDTTATTNPNTPTNNPNFPDDDPVERFTAVGTRMPKGVLLVGPPGTGKTPLAKAIAGEAGVPFFLIFGSEFVEMFVGVGASRVRDLFMKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5648g00010 261 PANTHER METALLOPROTEASE M41 FTSH 156 261 - -
Vium5648g00010 261 Pfam Myb/SANT-like DNA-binding domain 21 123 IPR044822 -
Vium5648g00010 261 Gene3D - 152 261 IPR027417 -
Vium5648g00010 261 MobiDBLite consensus disorder prediction 119 152 - -
Vium5648g00010 261 Pfam ATPase family associated with various cellular activities (AAA) 169 261 IPR003959 GO:0005524|GO:0016887
Vium5648g00010 261 Gene3D - 23 89 - -
Vium5648g00010 261 SMART 118neu2 30 128 IPR006578 -
Vium5648g00010 261 SMART AAA_5 165 259 IPR003593 GO:0016887
Vium5648g00010 261 MobiDBLite consensus disorder prediction 129 149 - -
Vium5648g00010 261 FunFam Trihelix transcription factor ASIL2 23 89 - -
Vium5648g00010 261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 261 IPR027417 -
Vium5648g00010 261 MobiDBLite consensus disorder prediction 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5648g00010 Vium-Chr5648 87489 88310 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5648g00010 158 261 Miscellaneous Gene Families AT3G02450 65.385 1.13e-40 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium5648g00010 Myb_DNA-bind_4 4.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5648g00010 K03798 - vum:124841341 484.567