Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5644g00005 ATGCGTTGGACCACTGCACTCCATGCTCGCTTCGTCCATGTCGTTCAACTTTTGGGTGGCCACGAAAGGGCTACACCCAAATCAGTTCTCGAGCTAATGGATGTAAAGGATCTCACTTTAGCCCATGTTAAATCTCACTTGCAGATGTACCGAACAGTGAAAACTACTGATAGAGCTGCGGCATCATCGGGGCAATCTGATACTTATGACAATGGGTCTTCTGGAGATACTTCTGAAGACTTGGTGTTTGATAGAAACTCTCCAAGGAGGTCTGATCTATCCATTAGGCAGGCAAGAACTAGTGTTAATCAAGATATTGGAAATGGTGGCCTTTGGAACAACTCTTCAAGCAGGCAAGCCTTCTTGCATGGGAAGCCAAACCTTGATTCCATTGGGAACGTGCCTTCTGTTGAGGGAATGGATCCAAAGGGCCAAAGCAATGAAATATCAGATGGAAACTCATCCTCAGACATTGCAGAATCAAGTGGCAAGAAGCTAAATTTGGATTTGGAGTTCACCTTAGGTCGATCACTTTGA 537 0.4507 MRWTTALHARFVHVVQLLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDTYDNGSSGDTSEDLVFDRNSPRRSDLSIRQARTSVNQDIGNGGLWNNSSSRQAFLHGKPNLDSIGNVPSVEGMDPKGQSNEISDGNSSSDIAESSGKKLNLDLEFTLGRSL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5644g00005 178 Gene3D - 1 55 - -
Vium5644g00005 178 FunFam Myb family transcription factor 1 55 - -
Vium5644g00005 178 Pfam Myb-like DNA-binding domain 1 51 IPR001005 -
Vium5644g00005 178 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 177 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vium5644g00005 178 MobiDBLite consensus disorder prediction 136 162 - -
Vium5644g00005 178 SUPERFAMILY Homeodomain-like 1 53 IPR009057 -
Vium5644g00005 178 MobiDBLite consensus disorder prediction 57 93 - -
Vium5644g00005 178 MobiDBLite consensus disorder prediction 146 162 - -
Vium5644g00005 178 NCBIfam myb-like DNA-binding domain, SHAQKYF class 1 52 IPR006447 GO:0003677
Vium5644g00005 178 MobiDBLite consensus disorder prediction 57 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5644g00005 Vium-Chr5644 27450 32226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5644g00005 1 121 G2-like Transcription Factor Family AT4G17695 59.504 7.25e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium5644g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5644g00005 - - vum:124841335 355.14