Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5644g00002 ATGGAGAACCATCTACAGTATTACTTTCTAACTTCATTAAAGCTAAATGGGCTTTCTAACAACAGGCAAAATCCTGGAAGCAATGGTCAAGGTTTTTCCAGCTTTGGTGGAGATCTAGAGCATAGAAGNGCCCTGCATCCTCCAGCAACTAGGTTCTATGATACTCCAAAAATATGTAAATTTTCGTGGTTGCCCAAGTCTATTTTGCGGCTCTTGGAAACATCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGCATGTTTGCTTGGCACGTGGAAGATCATTATTTATACAGCGTTAATTATCATCACTGTGGAGCATCAAAAACTTGGTATGGCATTCCAGGTCACGCAGCATTGGAATTTGAAAGGGTGGTGAGACAACACGTGTATACTAATGATATTTTGTCAACTGGTGGAGAAGATGGAGCCTTTGATGTTCTCCTGGGGAAAACAACTATGTTCCCACCAGATATTTTGTTGGAGCATGAAGTCCCTGTCTACAAGGCTGTTCAAAATCCAGGGGATTACGTAATAACTTTCCCGAGAGCATATCATGCTGGCTTTAGTCATGGCTTCAACTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTGCAAGTCAAAGATATGCACTTCTTCACAGAGATCCTTTGCTTCCCCATGAAGAACTTTTATGCAAAGAAGCAATGCTTCTGTATGCAACATTAAGACTTGAAGATTCAGACATTTTCCCCGAAGAGTTGTTATCTCGTGATTGTGTTAAGATTTCTTTTGTTAATTTGATGCGCTTTCAACATTGCGCTCGTTGGCTGTTAATGAAATCAAGGGCTTGTACAAGTGTTTCTTCACATTCTCAGGGTACAATTCTCTGTAGCCTCTGCAAACGGGACTGCTATGTAGCTTATGTTGACTGTGAATGTCACCTGCACCCAGTATGCCTTCGCCATGATGTAGAATTTCTTGACTTCACCTGTGGGACCAAGCGCACACTTTATCTTAGGGAAGATACTCCAGACATGGAAGCTGCGGCCAAGAGATTTGAGCAGGAAGATGGAATTTTGAAAGAGATACTTAAGGAGATGAAAAGTGAAAAAAATATCTATTCATGCCCTTTGTCGAACATGTTCCAGATGGCTGAGGCTAATGGATATACACCGTATTGTGAGATGAAATTTGATTCTATTGCTAATTTTTGTACCACCTCAAAGCTGTCAACAAACAATCAAGAGCATATGCGAAGTCAATTTGTTTCAAGACCTGAGGTATCTTCTGCTTCATCTACGCTATGTTCTCTTTCCAAACCTCCTGAGATCTCTGCTTCCAATATCGATGAGGTGAATGCTAACTTTAAATTAGGCAGTCCTGATTGTGAAGAGAATTGTGAAAGAATATCCAATGATACTTCTGAGTCTTTTCAATCCTCTCTTCAGTATGAATGCCCTAATAAATCTATGGGTAATGTGCGTAGATTAGAGAAGAAGCTTATTGTGGATAACAAGAGTGACGATTCTGATTCAGGGATTTTTAGGGTTAAGCGCCCTTCTTCTCTTAAGGCAGAGAGGAGAAATATAAGAGGTGCTACGTTTTCAACAAATTCTGGACAGCAGGAACTCAAACAATTGAAGAAAGACCTTCACGAAGGAAGGAGTGTGCCACAAGTAGATATGAGAAAAAGAAAGGAAAGGAGTTACAAATATAGTGACGGTGTTAGTCATAAGGTTAATAATGGCAAAATTTCCTCGAGGGACAAATTTGCAAGGGGAAATAGCATTCCCGTATCCGTAAGATATAAGAAGCGAAGTAATGGGGAAGTTAATAGACGACGACATCATTGCCGGACAGATAGGTTGCTGCATTCCATAGAGGTTGCTCCAAAGCGCCTTAAAGCTCGAGACCCTTCATTTATGGGGATAAACAGCAGATTGAATTGA 1968 0.4065 MENHLQYYFLTSLKLNGLSNNRQNPGSNGQGFSSFGGDLEHRXALHPPATRFYDTPKICKFSWLPKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSVNYHHCGASKTWYGIPGHAALEFERVVRQHVYTNDILSTGGEDGAFDVLLGKTTMFPPDILLEHEVPVYKAVQNPGDYVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLHRDPLLPHEELLCKEAMLLYATLRLEDSDIFPEELLSRDCVKISFVNLMRFQHCARWLLMKSRACTSVSSHSQGTILCSLCKRDCYVAYVDCECHLHPVCLRHDVEFLDFTCGTKRTLYLREDTPDMEAAAKRFEQEDGILKEILKEMKSEKNIYSCPLSNMFQMAEANGYTPYCEMKFDSIANFCTTSKLSTNNQEHMRSQFVSRPEVSSASSTLCSLSKPPEISASNIDEVNANFKLGSPDCEENCERISNDTSESFQSSLQYECPNKSMGNVRRLEKKLIVDNKSDDSDSGIFRVKRPSSLKAERRNIRGATFSTNSGQQELKQLKKDLHEGRSVPQVDMRKRKERSYKYSDGVSHKVNNGKISSRDKFARGNSIPVSVRYKKRSNGEVNRRRHHCRTDRLLHSIEVAPKRLKARDPSFMGINSRLN 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5644g00002 655 Gene3D Cupin 28 255 - -
Vium5644g00002 655 SUPERFAMILY Clavaminate synthase-like 47 239 - -
Vium5644g00002 655 Pfam JmjC domain, hydroxylase 83 206 IPR003347 -
Vium5644g00002 655 ProSiteProfiles JmjC domain profile. 53 223 IPR003347 -
Vium5644g00002 655 SMART cupin_9 48 223 IPR003347 -
Vium5644g00002 655 MobiDBLite consensus disorder prediction 551 572 - -
Vium5644g00002 655 MobiDBLite consensus disorder prediction 532 572 - -
Vium5644g00002 655 PANTHER LYSINE-SPECIFIC DEMETHYLASE 60 589 - -
Vium5644g00002 655 Pfam C5HC2 zinc finger 303 354 IPR004198 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5644g00002 Vium-Chr5644 5357 12632 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5644g00002 65 237 C2H2 Transcription Factor Family AT5G04240 49.133 8.44e-52 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium5644g00002 JmjC 2.1e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5644g00002 - - vum:124841332 1332.39