Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5644g00001 AAATTTTCGTGGTTGCCCAAGTCTATTTTGCGGCTCTTGGAAACATCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGCATGTTTGCTTGGCACGTGGAAGATCATTATTTATACAGCGTTAATTATCATCACTGTGGAGCATCAAAAACTTGGTATGGCATTCCAGGTCACGCAGCATTGGAATTTGAAAGGGTGGTGAGACAACACGTGTATACTAATGATATTTTGTCAACTGGTGGAGAAGATGGAGCCTTTGATGTTCTCCTGGGGAAAACAACTATGTTCCCACCAGATATTTTGTTGGAGCATGAAGTCCCTGTCTACAAGGCTGTTCAAAATCCAGGGGATTACGTAATAACTTTCCCAAGAGCATATCATGCTGGCTTTAGTCATGGCTTCAACTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTGCAAGTCAAAGATATGCACTTCTTCACAGAGATCCTTTGCTTCCCCATGAAGAACTTTTATGCAAAGAAGCAATGCTTCTGTATGCAACATTAAGACTTGAAGATTCAGACATTTTCCCCGAAGAGTTGTTATCTCGTGATTGTGTTAAGATTTCTTTTGTTAATTTGATGCGCTTTCAACATTGCGCTCGTTGGCTGTTAATGAAATCAAGGGCTTGTACAAGTGTTTCTTCACATTCTCAGGGTACAATTCTCTGTAGCCTCTGCAAACGGGACTGCTATGTAGCTTATGTTGACTGTGAATGTCACCTGCACCCAGTATGCCTTCGCCATGATGTAGAATTTCTTGACTTCACCTGTGGGACCAAGCGCACACTTTATCTTAGGGAAGATACTCCAGACATGGAAGCTGCGGCCAAGAGATTTGAGCAGGAAGATGGAATTTTGAAAGAGATACTTAAGGAGATGAAAAGTGAAAAAAATATCTATTCATGCCCTTTGTCGAACATGTTCCAGATGGCTGAGGCTAATGGATATACACCGTATTGTGAGATGAAATTTGATTCTATTGCTAATTTTTGTACCACCTCAAAGCTGTCAACAAACAATCAAGAGCATATGCGAAGTCAATTTGTTTCAAGACCTGAGGTATCTTCTGCTTCATCTACGCTATGTTCTCTTTCCAAACCTCCTGAGATCTCTGCTTCCAATATCGATGAGGTGAATGCTAACTTTAAATTAGGCAGTCCTGATTGTGAAGAGAATTGTGAAAGAATATCCAATGATACTTCTGAGTCTTTTCAATCCTCTCTTCAGTATGAATGCCCTAATAAATCTATGGGTAATGTGCGTAGATTAGAGAAGAAGCTTATTGTGGATAACAAGAGTGACGATTCTGATTCAGGGATTTTTAGGGTTAAGCGCCCTTCTTCTCTTAAGGCAGAGAGGAGAAATATAAGAGGTGCTACGTTTTCAACAAATTCTGGACAGCAGGAACTCAAACAATTGAAGAAAGACCTTCACGAAGGAAGGAGTGTGCCACAAGTAGATATGAGAAAAAGAAAGGAAAGGAGTTACAAATATAGTGACGGTGTTAGTCATAAGGTTAATAATGGCAAAATTTCCTCGAGGGACAAATTTGCAAGGGGAAATAGCATTCCCGTATCCGTAAGATATAAGAAGCGAAGTAATGGGGAAGTTAATAGACGACGACATCATTGCCGGACAGATAGGTTGCTGCATTCCATAGAGGTTGCTCCAAAGCGCCTTAAAGCTCGAGACCCTTCATTTATGGGGATAAACAGCAGATTGAATTGA 1791 0.4065 KFSWLPKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSVNYHHCGASKTWYGIPGHAALEFERVVRQHVYTNDILSTGGEDGAFDVLLGKTTMFPPDILLEHEVPVYKAVQNPGDYVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLHRDPLLPHEELLCKEAMLLYATLRLEDSDIFPEELLSRDCVKISFVNLMRFQHCARWLLMKSRACTSVSSHSQGTILCSLCKRDCYVAYVDCECHLHPVCLRHDVEFLDFTCGTKRTLYLREDTPDMEAAAKRFEQEDGILKEILKEMKSEKNIYSCPLSNMFQMAEANGYTPYCEMKFDSIANFCTTSKLSTNNQEHMRSQFVSRPEVSSASSTLCSLSKPPEISASNIDEVNANFKLGSPDCEENCERISNDTSESFQSSLQYECPNKSMGNVRRLEKKLIVDNKSDDSDSGIFRVKRPSSLKAERRNIRGATFSTNSGQQELKQLKKDLHEGRSVPQVDMRKRKERSYKYSDGVSHKVNNGKISSRDKFARGNSIPVSVRYKKRSNGEVNRRRHHCRTDRLLHSIEVAPKRLKARDPSFMGINSRLN 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5644g00001 596 ProSiteProfiles JmjC domain profile. 1 164 IPR003347 -
Vium5644g00001 596 MobiDBLite consensus disorder prediction 473 530 - -
Vium5644g00001 596 Gene3D Cupin 1 197 - -
Vium5644g00001 596 Pfam C5HC2 zinc finger 244 295 IPR004198 -
Vium5644g00001 596 SMART cupin_9 1 164 IPR003347 -
Vium5644g00001 596 PANTHER LYSINE-SPECIFIC DEMETHYLASE 3 530 - -
Vium5644g00001 596 MobiDBLite consensus disorder prediction 492 521 - -
Vium5644g00001 596 Pfam JmjC domain, hydroxylase 24 147 IPR003347 -
Vium5644g00001 596 SUPERFAMILY Clavaminate synthase-like 7 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5644g00001 Vium-Chr5644 1843 5572 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5644g00001 6 178 C2H2 Transcription Factor Family AT5G04240 49.133 2.30e-52 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium5644g00001 JmjC 1.8e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5644g00001 - - vum:124841332 1222.22