Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5642g00002 ATGGAAAAAATGAAGTTAATATCGAGAGAAACCATCAAACCCTCCACACCAACTCCTCCACACCTAAAATTCTACCCACTCTGCTTCATCGACCACATCGTTTTCCGCAACTACATCCCAATACTTCTGTTCTACTCTGCAAACCACCATTCCAAGAACCACCAAGCTTCCAAAATCTCAACCCTCAAGAAATCTTTATCCCATGTTCTGTCACGATACTACCCCTTCGCGGGGAAGCTCAGAGACCAACTTTCCATCGAATGCAACGACCAAGGTGTGTCCTTTCTCGTCACAACCTTCACATGCAACCTTTCATCGGTCCTCCACAATCCCAACCATGAAACCTTCGACCCTCTGTTCCCAGATCAACTACAGTGGAACCCCATGGAAACAGCTTCTTCAACTATTGTAGCCATTCAGATAAACTGTTTTGCATGCGGAGGAATCGCCATAAGCGTCTGTATGTGTCACAAAGTTGCCGACGCCGCCACACTCTGCAACTTCATCAATGACTGGGCCACATTCAGCCGCCATAACCAAAACCAAGAAGAAGAACAAGCAGAGTTGTTCTCATCATTACCCTTCCCTGTTCCCGGGGCTTCATTTTTCCCGCAAGAAGACTTGCCCGTTTTCCCGGAAGCTGCCTTCGTGAAAAACGACACCGTTTGCCGAAGGTTTGTGTTCGAGGCTGCTAAGATCGACTCGCTCAAAGCCATGGTGTCCTCCTCCGGCAACGTGCACAACCCCACGCGCGTGGAAGTTGTGAGTGCGTTGATCTACAAGCGAGCGGTTTCATCGCTAGGGTTGACTTTCAAAACGACGGCGTTCCGCACCGCCGTGAACCTCCGGAACAGAACGGTTCCTCCCCTTCCTGGAAAAAGCCTGGGGAATCTGGTTTGGTTTCTCTTCGTGTCCAACCTGGGTGAAGAGGCGGAGCTGCAGGAGTTGGTGGTGAAAATGAAAGAAGGGATGAGCGAGTTCTGTGAGACGTGTGGGAAGAAGTTTGGAGGGAAGAAGAAGGACTCGAGGTTCATCACGGAGTGTCTGAAGCAGGCTACTAGGGTTACGGAGGGTGGGAGTTTGGTGTGTTGCGCGAGTTGGTGCAGGTTTCCGATGTACGAAGCGGATTTTGGGTGGGGGAAACCGTCGTGGGTGACCACTAGCGAGTGTCCGGTGAAGAATAGCGTTGTTTTGATGGATACGAGAGACGGTGAAGGGATTGAAGCGCTTGTGAACATGGAGGAGCATGACATGGCCAAGTTCGAGCGTGACTTCCACCTTCTTCAATATGCTTCTCTTAATCCATTAGTTCAACATGGTTTAGAAATAGGTGGTTTAGAGATTCCGTTTGATGAAGTAGTTGTTGGATTG 1371 0.4967 MEKMKLISRETIKPSTPTPPHLKFYPLCFIDHIVFRNYIPILLFYSANHHSKNHQASKISTLKKSLSHVLSRYYPFAGKLRDQLSIECNDQGVSFLVTTFTCNLSSVLHNPNHETFDPLFPDQLQWNPMETASSTIVAIQINCFACGGIAISVCMCHKVADAATLCNFINDWATFSRHNQNQEEEQAELFSSLPFPVPGASFFPQEDLPVFPEAAFVKNDTVCRRFVFEAAKIDSLKAMVSSSGNVHNPTRVEVVSALIYKRAVSSLGLTFKTTAFRTAVNLRNRTVPPLPGKSLGNLVWFLFVSNLGEEAELQELVVKMKEGMSEFCETCGKKFGGKKKDSRFITECLKQATRVTEGGSLVCCASWCRFPMYEADFGWGKPSWVTTSECPVKNSVVLMDTRDGEGIEALVNMEEHDMAKFERDFHLLQYASLNPLVQHGLEIGGLEIPFDEVVVGL 457
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium5642g00002 457 Gene3D - 219 432 IPR023213 -
Vium5642g00002 457 PANTHER F21J9.9 5 432 - -
Vium5642g00002 457 Gene3D - 2 209 IPR023213 -
Vium5642g00002 457 Pfam Transferase family 4 427 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium5642g00002 Vium-Chr5642 6499 8785 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5642g00002 4 423 Monolignol Biosynthesis Gene Families AT5G48930 23.400 7.18e-23 98.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5642g00002 - - pvu:PHAVU_002G177000g 776.163