Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5642g00001 ATGGAAAAAATGAAGTTAATATCGAGAGAAACCATCAAACCCTCCACACCAACTCCTCCACACCTAAAATTCTACCCACTCTGCTTCATCGACCACATCGTTTTCCGCAACTACATCCCAATACTTCTGTTCTACTCTGCAAACCACCATTCCAAGAACCACCAAGCTTCCAAAATCTCAACCCTCAAGAAATCTTTATCCCATGTTCTGTCACGATACTACCCCTTCGCGGGGAAGCTCAGAGACCAACTTTCCATCGAATGCAACGACCAAGGTGTGTCCTTTCTCGTCACAACCTTCACATGCAACCTTTCATCGGTCCTCCACAATCCCAACCATGAAACCTTCGACCCTCTGTTCCCAGATCAACTACAGTGGAACCCCATGGAAACAGCTTCTTCAACTATTGTAGCCATTCAGATAAACTGTTTTGCATGCGGAGGAATCGCCATAAGCGTCTGTATGTGTCACAAAGTTGCCGACGCCGCCACACTCTGCAACTTCATCAATGACTGGGCCACATTCAGCCGCCATAACCAAAACCAAGAAGAAGAACAAGCAGAGTTGTTCTCATCATTACCCTTCCCTGTTCCCGGGGCTTCATTTTTCCCGCAAGAAGACTTGCCCGTTTTCCCGGAAGCTGCCTTCGTGAAAAACGACACCGTTTGCCGAAGGTTTGTGTTCGAGGCTGCTAAGATCGACTCGCTCAAAGCCATGGTGTCCTCCTCCGGCAACGTGCACAACCCCACGCGCGTGGAAGTTGTGAGTGCGTTGATCTACAAGCGAGCGGTTTCATCGCTAGGGTTGACTTTCAAAACGACGGCGTTCCGCACCGCCGTGAACCTCCGGAACAGAACGGTTCCTCCCCTTCCTGGAAAAAGCCTGGGGAATCTGGTTTGGTTTCTCTTCGTGTCCAACCTGGGTGAAGAGGCGGAGCTGCAGGAGTTGGTGGTGAAAATGAAAGAAGGGTTGAGCGAGTTCTGTGAGACGTGTGGGAAGAAGTTTGGAGGGAAGAAGAAGGACTCGAGGTTCATCACGGAGTGTCTGAAGCAGGCTACTAGGGTTACGGAGGGTGGGAGTTTGGTGTGTTGCGCGAGTTGGTGCAGGTTTCCGATGTACGAAGCGGATTTTGGGTGGGGGAAACCGTCGTGGGTGACCACTAGCGAGTGTCCGGTGAAGAATAGCGTTGTTTTGATGGATACGAGAGACGGTGAAGGGATTGAAGCGCTTGTGAACATGGAGGAGCATGACATGGCCAAGTTCGAGCGTGACTTCCACCTTCTTCAATATGCTTCTCTTAATCCATTAGTTCAACATGGTAGCTAA 1326 0.5015 MEKMKLISRETIKPSTPTPPHLKFYPLCFIDHIVFRNYIPILLFYSANHHSKNHQASKISTLKKSLSHVLSRYYPFAGKLRDQLSIECNDQGVSFLVTTFTCNLSSVLHNPNHETFDPLFPDQLQWNPMETASSTIVAIQINCFACGGIAISVCMCHKVADAATLCNFINDWATFSRHNQNQEEEQAELFSSLPFPVPGASFFPQEDLPVFPEAAFVKNDTVCRRFVFEAAKIDSLKAMVSSSGNVHNPTRVEVVSALIYKRAVSSLGLTFKTTAFRTAVNLRNRTVPPLPGKSLGNLVWFLFVSNLGEEAELQELVVKMKEGLSEFCETCGKKFGGKKKDSRFITECLKQATRVTEGGSLVCCASWCRFPMYEADFGWGKPSWVTTSECPVKNSVVLMDTRDGEGIEALVNMEEHDMAKFERDFHLLQYASLNPLVQHGS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5642g00001 441 Gene3D - 219 432 IPR023213 -
Vium5642g00001 441 PANTHER F21J9.9 5 432 - -
Vium5642g00001 441 Pfam Transferase family 4 427 - -
Vium5642g00001 441 Gene3D - 2 209 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5642g00001 Vium-Chr5642 1396 2734 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5642g00001 4 423 Monolignol Biosynthesis Gene Families AT5G48930 23.400 7.33e-23 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5642g00001 - - pvu:PHAVU_002G177000g 776.933