Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5641g00001 ATGAGCGATCATCTGGTGCTGTTAGTGGACCGCCTGGTGCGGCCCGTGCCAGTGGTGGAGCCGCTGGCCCAGCACCCGGTCCAGCCCGCTCCCGAGCCCTCAACCCCCATGGATGAAGCTGCGGCGGGACCCTCCGGCTCCGCTTCGGCGGCCGAGGACGACAGCTTCGACGAGAACGCGCTGCTGTTGCCCTTGGCGGAGTGTCGCATTTGCCAAGAGGAGGATAGCGTCAACAATTTAGAAACTCCTTGCTCCTGCAGCGGTAGTCTTAAGTATGCTCATAGAAAGTGCGTCCAGCATTGGTGTAATGAGAAAGGTGATATAATTTGTGAGATTTGTCACAAGTCGTATGAACCTGGTTATACTGCCCCGCCACCTCGTCTTCAACCTGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAATCTCTGGCATGCCATTGGATTTGCGTGACCCCCGACTCTTGGCAATTGCCGAGGCAGAACGTCAATTCTTGGAAGCTGAATATGATGGATATGCTGCTTCAAACGCCAATGGAGCTGCATTTTGTCGTTCAGTTGCTCTAATTTTAATGGCCCTTTTACTTTTGAGGCATGCACTTTCTGTCACGGATGCTGATGCTGAAGATGATCCATCTACTTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCCTGGGCAATCAGTATTTTGCAACGCAGGCGACAAAGACAAGAGGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTTGTTCTACAATCTGAACAACGTAGGGGTCTGCAGTTTGCCATAGCACAAGCACCAACAATGAACACACACCAGTAA 852 0.5106 MSDHLVLLVDRLVRPVPVVEPLAQHPVQPAPEPSTPMDEAAAGPSGSASAAEDDSFDENALLLPLAECRICQEEDSVNNLETPCSCSGSLKYAHRKCVQHWCNEKGDIICEICHKSYEPGYTAPPPRLQPEETTIDIGGGWTISGMPLDLRDPRLLAIAEAERQFLEAEYDGYAASNANGAAFCRSVALILMALLLLRHALSVTDADAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSEQRRGLQFAIAQAPTMNTHQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5641g00001 283 MobiDBLite consensus disorder prediction 23 54 - -
Vium5641g00001 283 SUPERFAMILY RING/U-box 67 118 - -
Vium5641g00001 283 ProSiteProfiles Zinc finger RING-CH-type profile. 60 120 IPR011016 GO:0008270
Vium5641g00001 283 CDD RING_CH-C4HC3_MARCH 68 114 - -
Vium5641g00001 283 Pfam Protein of unknown function (DUF3675) 119 237 IPR022143 -
Vium5641g00001 283 SMART ringv_2 67 114 IPR011016 GO:0008270
Vium5641g00001 283 Coils Coil 156 176 - -
Vium5641g00001 283 FunFam RING/FYVE/PHD zinc finger protein 56 124 - -
Vium5641g00001 283 Pfam RING-variant domain 68 113 IPR011016 GO:0008270
Vium5641g00001 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 122 IPR013083 -
Vium5641g00001 283 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 247 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5641g00001 Vium-Chr5641 38041 40714 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5641g00001 57 143 C3H Transcription Factor Family AT2G37950 35.354 1.54e-08 52.0