Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium5638g00001 | ATGGAGAGGCACAAGTGCAAGCTTTGCTTAAGGAGTTTCGCCAATGGAAGAGCTTTAGGAGGTCACATGAGGTCTCACATGATGAACCTACCCGTTCCTCCCAAAGAGAGCGAGTTCGTTCCGGTTCAACTCAGTTTTGAGGCCGAGTCATCGCCTTCTCAATCCTCTTCTTCCTTCTACGGTCTCAGAGAGAATCCCAAGAAAAGTTTCCGTTTTGCAGATCCTGAATTCTCGTTCGCAGCAGAAACGGGTTCCGTGATCCTCCAAGATAGAGAGAGCGAGACGGAGTCGTCCAAGAACCCGACTCGAAAACGATCCAAGAGGGCGTGGCAACTCGGAGAACCCGTGAAAAAGATGAAACTTTGTGGGAACAATAACAAGAACGAATCTGCGAGTTCTGCTTCCGATACCACCGCGGAAGAAGCCGTAGCATTTTGTCTAATGATGCTGTCTCGTGACAGATGGAAGAAATATGATGATCATAAAAACATACAGCAGTATGATGATGATGAGGTTGAAGATGACGATGAAGACGATGATGATGAAGAAGAAGAAGAAGATGAAGAAGAGGATGATGAAGAAAAAAATGGTTTTGAATTGGAGGAGATGAAATCTGTTAAGAGGAGTAACAAGGTGCGTGGAAGGTACAAATGCGAAACGTGTGACAAGGTGTTTCGATCTTACCAAGCTCTTGGTGGGCACAGAGCGAGTCACAAGAAGATGAAGTTAAACTCTGAAACGGAGTTTCAGAAACCCGAACCTGAACTAGAGCACGTTGCTGTATCGGAGAAGAAAATCCACGAATGCCCGGTTTGCTCTAGAGTCTTCGGTTCGGGTCAAGCACTCGGTGGACACAAGAGAACACATGTTATAGGTTCTTCTGCAACTCACACCACTGCAACCGTAAGAACTTCTGCAACTGTTTCTTTTGGAGCTTCTGTCAGAGTTGGAGACAGTTTGATAGATCTTAATCTCCCTGCTCCTGTAGATGATGATGAAGACATTAGCCAGTTCGATCACTCTGCTCTTTCCGATGCAGAGTTTGTCAAAGAGTGA | 1056 | 0.4574 | MERHKCKLCLRSFANGRALGGHMRSHMMNLPVPPKESEFVPVQLSFEAESSPSQSSSSFYGLRENPKKSFRFADPEFSFAAETGSVILQDRESETESSKNPTRKRSKRAWQLGEPVKKMKLCGNNNKNESASSASDTTAEEAVAFCLMMLSRDRWKKYDDHKNIQQYDDDEVEDDDEDDDDEEEEEDEEEDDEEKNGFELEEMKSVKRSNKVRGRYKCETCDKVFRSYQALGGHRASHKKMKLNSETEFQKPEPELEHVAVSEKKIHECPVCSRVFGSGQALGGHKRTHVIGSSATHTTATVRTSATVSFGASVRVGDSLIDLNLPAPVDDDEDISQFDHSALSDAEFVKE | 351 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium5638g00001 | 351 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 218 | 238 | IPR013087 | - | |
| Vium5638g00001 | 351 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 267 | 289 | IPR013087 | - | |
| Vium5638g00001 | 351 | MobiDBLite | consensus disorder prediction | 169 | 197 | - | - | |
| Vium5638g00001 | 351 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 269 | 289 | IPR013087 | - | |
| Vium5638g00001 | 351 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 26 | IPR013087 | - | |
| Vium5638g00001 | 351 | MobiDBLite | consensus disorder prediction | 92 | 110 | - | - | |
| Vium5638g00001 | 351 | Gene3D | Classic Zinc Finger | 213 | 289 | - | - | |
| Vium5638g00001 | 351 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 216 | 243 | IPR013087 | - | |
| Vium5638g00001 | 351 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 4 | 31 | IPR013087 | - | |
| Vium5638g00001 | 351 | SUPERFAMILY | beta-beta-alpha zinc fingers | 215 | 289 | IPR036236 | - | |
| Vium5638g00001 | 351 | Pfam | C2H2-type zinc finger | 215 | 240 | - | - | |
| Vium5638g00001 | 351 | Pfam | C2H2-type zinc finger | 3 | 27 | - | - | |
| Vium5638g00001 | 351 | Pfam | C2H2-type zinc finger | 267 | 289 | - | - | |
| Vium5638g00001 | 351 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 350 | IPR044303 | GO:0006355 | |
| Vium5638g00001 | 351 | SMART | c2h2final6 | 4 | 26 | IPR013087 | - | |
| Vium5638g00001 | 351 | SMART | c2h2final6 | 216 | 238 | IPR013087 | - | |
| Vium5638g00001 | 351 | SMART | c2h2final6 | 267 | 289 | IPR013087 | - | |
| Vium5638g00001 | 351 | MobiDBLite | consensus disorder prediction | 84 | 110 | - | - | |
| Vium5638g00001 | 351 | MobiDBLite | consensus disorder prediction | 162 | 200 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium5638g00001 | Vium-Chr5638 | 55830 | 57214 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium5638g00001 | 1 | 333 | C2H2 Transcription Factor Family | AT3G60580 | 45.614 | 2.97e-74 | 229 |
Transcription factors information