Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5638g00001 ATGGAGAGGCACAAGTGCAAGCTTTGCTTAAGGAGTTTCGCCAATGGAAGAGCTTTAGGAGGTCACATGAGGTCTCACATGATGAACCTACCCGTTCCTCCCAAAGAGAGCGAGTTCGTTCCGGTTCAACTCAGTTTTGAGGCCGAGTCATCGCCTTCTCAATCCTCTTCTTCCTTCTACGGTCTCAGAGAGAATCCCAAGAAAAGTTTCCGTTTTGCAGATCCTGAATTCTCGTTCGCAGCAGAAACGGGTTCCGTGATCCTCCAAGATAGAGAGAGCGAGACGGAGTCGTCCAAGAACCCGACTCGAAAACGATCCAAGAGGGCGTGGCAACTCGGAGAACCCGTGAAAAAGATGAAACTTTGTGGGAACAATAACAAGAACGAATCTGCGAGTTCTGCTTCCGATACCACCGCGGAAGAAGCCGTAGCATTTTGTCTAATGATGCTGTCTCGTGACAGATGGAAGAAATATGATGATCATAAAAACATACAGCAGTATGATGATGATGAGGTTGAAGATGACGATGAAGACGATGATGATGAAGAAGAAGAAGAAGATGAAGAAGAGGATGATGAAGAAAAAAATGGTTTTGAATTGGAGGAGATGAAATCTGTTAAGAGGAGTAACAAGGTGCGTGGAAGGTACAAATGCGAAACGTGTGACAAGGTGTTTCGATCTTACCAAGCTCTTGGTGGGCACAGAGCGAGTCACAAGAAGATGAAGTTAAACTCTGAAACGGAGTTTCAGAAACCCGAACCTGAACTAGAGCACGTTGCTGTATCGGAGAAGAAAATCCACGAATGCCCGGTTTGCTCTAGAGTCTTCGGTTCGGGTCAAGCACTCGGTGGACACAAGAGAACACATGTTATAGGTTCTTCTGCAACTCACACCACTGCAACCGTAAGAACTTCTGCAACTGTTTCTTTTGGAGCTTCTGTCAGAGTTGGAGACAGTTTGATAGATCTTAATCTCCCTGCTCCTGTAGATGATGATGAAGACATTAGCCAGTTCGATCACTCTGCTCTTTCCGATGCAGAGTTTGTCAAAGAGTGA 1056 0.4574 MERHKCKLCLRSFANGRALGGHMRSHMMNLPVPPKESEFVPVQLSFEAESSPSQSSSSFYGLRENPKKSFRFADPEFSFAAETGSVILQDRESETESSKNPTRKRSKRAWQLGEPVKKMKLCGNNNKNESASSASDTTAEEAVAFCLMMLSRDRWKKYDDHKNIQQYDDDEVEDDDEDDDDEEEEEDEEEDDEEKNGFELEEMKSVKRSNKVRGRYKCETCDKVFRSYQALGGHRASHKKMKLNSETEFQKPEPELEHVAVSEKKIHECPVCSRVFGSGQALGGHKRTHVIGSSATHTTATVRTSATVSFGASVRVGDSLIDLNLPAPVDDDEDISQFDHSALSDAEFVKE 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5638g00001 351 ProSitePatterns Zinc finger C2H2 type domain signature. 218 238 IPR013087 -
Vium5638g00001 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 267 289 IPR013087 -
Vium5638g00001 351 MobiDBLite consensus disorder prediction 169 197 - -
Vium5638g00001 351 ProSitePatterns Zinc finger C2H2 type domain signature. 269 289 IPR013087 -
Vium5638g00001 351 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Vium5638g00001 351 MobiDBLite consensus disorder prediction 92 110 - -
Vium5638g00001 351 Gene3D Classic Zinc Finger 213 289 - -
Vium5638g00001 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 216 243 IPR013087 -
Vium5638g00001 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Vium5638g00001 351 SUPERFAMILY beta-beta-alpha zinc fingers 215 289 IPR036236 -
Vium5638g00001 351 Pfam C2H2-type zinc finger 215 240 - -
Vium5638g00001 351 Pfam C2H2-type zinc finger 3 27 - -
Vium5638g00001 351 Pfam C2H2-type zinc finger 267 289 - -
Vium5638g00001 351 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 350 IPR044303 GO:0006355
Vium5638g00001 351 SMART c2h2final6 4 26 IPR013087 -
Vium5638g00001 351 SMART c2h2final6 216 238 IPR013087 -
Vium5638g00001 351 SMART c2h2final6 267 289 IPR013087 -
Vium5638g00001 351 MobiDBLite consensus disorder prediction 84 110 - -
Vium5638g00001 351 MobiDBLite consensus disorder prediction 162 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5638g00001 Vium-Chr5638 55830 57214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5638g00001 1 333 C2H2 Transcription Factor Family AT3G60580 45.614 2.97e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium5638g00001 zf-C2H2_6 2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5638g00001 - - gmx:100776462 436.417