Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5634g00003 ATGGAACCCCAGAAAACTCCTTCAATAGATGACAGCTTATTTGATATTTTCAAAGATACGGAGTTTGGGGACCTCCTTTCCATCTTGGAGAGCCTACAGGACTCGAAAGATTTTGCCCCCATCAACGATAGTGCTGTTATTATCAACCCAACTTCGAAAGAAAACGAGCAAATCGAGTTCCGAAAGGTCTCAATATCTTCAAGTGTTCCACAAGATTCTGAAACGGAGCTTGAAAGCAAGACAAAAAAGCTTAGCCCCACCTTGGCAGAGGAACCACAGAAGGTGTCTCATATAACAGTGGAGCGCAACCGAAGAAAGCAAATGAATTACAACTTGTCCGTATTGAGGTCACTTTTGCCTTCCTTCTATGCCAAACGGGGAGACCAAGCATCAATAATTGAAGGTGTGGTTGATTACATCAACGAGTTGCAACAGCTGCTACAGTGCCTAGAGGCTAAGAAACAAAGAAAAGTTTACAGTGATGTACTAAGCCCTAGGCTACTTTCAAGCACAAGGCCTTCACCACTAAGCCCTAGAAAACCACCCTTGAGCCCTAGAATAAACCTACCCATTAGTCCAAGGACTCCACAGCCTGGCAGCCCTTACAAACCAAGTTACCTTTCTCCAACTATACCCAACTCTCCTACTTCTTCGGCTTCTTCTTCAATCAACGATAACATCAAAGAGCTTGTTGCCAATTCCAAGTCTGTTATCGCCGATGTTGAGGTCAAGTTTTCAGGTCCACATCTTCTTCTCAAGACAGTTTCACCACCAATTCCTGGACAGGCTCTCAGAATAATATCAGCCCTTGAAGACCTAGCACTTGAAATCCTCCATGTCAACATCAACATTGCTGATGAAACCATGCTCAACTCTTTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTACTAA 954 0.435 MEPQKTPSIDDSLFDIFKDTEFGDLLSILESLQDSKDFAPINDSAVIINPTSKENEQIEFRKVSISSSVPQDSETELESKTKKLSPTLAEEPQKVSHITVERNRRKQMNYNLSVLRSLLPSFYAKRGDQASIIEGVVDYINELQQLLQCLEAKKQRKVYSDVLSPRLLSSTRPSPLSPRKPPLSPRINLPISPRTPQPGSPYKPSYLSPTIPNSPTSSASSSINDNIKELVANSKSVIADVEVKFSGPHLLLKTVSPPIPGQALRIISALEDLALEILHVNINIADETMLNSFTIKIGIECQLSAEELAQQIQQTFY 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5634g00003 317 SMART finulus 98 149 IPR011598 GO:0046983
Vium5634g00003 317 MobiDBLite consensus disorder prediction 206 222 - -
Vium5634g00003 317 PANTHER TRANSCRIPTION FACTOR FAMA 22 316 IPR044283 GO:0003700|GO:0010052
Vium5634g00003 317 Pfam Helix-loop-helix DNA-binding domain 93 144 IPR011598 GO:0046983
Vium5634g00003 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 160 IPR036638 GO:0046983
Vium5634g00003 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 143 IPR011598 GO:0046983
Vium5634g00003 317 MobiDBLite consensus disorder prediction 175 205 - -
Vium5634g00003 317 MobiDBLite consensus disorder prediction 169 222 - -
Vium5634g00003 317 Gene3D - 87 157 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5634g00003 Vium-Chr5634 29457 32364 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5634g00003 17 297 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 47.006 2.33e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium5634g00003 HLH 5.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5634g00003 K20558 - gmx:100789392 434.491