Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5632g00011 ATGAAGAAAACAGCATCTCCCAAATTTCAGCAATCTAGCCAAAGGAAACAGAATCATAATCACCAAGTTCTTGCTACAGTCAATGATGAAGAGAGGCACAATCCTAAGACCGGTTCTGCACTCAAGTCTTTCAAGAATGCTGTGAAGAAATGTGCACAGATTTTTTCATTGTTTCTCCTTGGCAAAAGAAAATCAGCCTCTTATGTTGTTGGAAATGATGACAGAAAAAATACATCTAAAGTCAGAGGGGTGGCATCATCATCAACTGATTTATCTTCGGAGAGTAACACCAAGAATTCATCAAAATGGAAGTTTTCTTATTCCTACGCCTCATCTAGCACTGCAAGTGGACAACTTGGAATTGGCAACTTCTCCTTTGAAGAAATTTACAAGTCAACTGCAAAATTCTCACCAGATAATGAAATTGGACAAGGTGGTTTCGGAACTGTCTACAGGGGAAAACTAAATGATGGATCTATGGTTGCCGTAAAGCGTGCCAAGAAGGAAGTAATACACAGTCACTTACACGAGTTCAAGAATGAAATATACACCTTGTCTCAAATTGAGCATCGGAATCTGGTGAGGTTGTATGGATATTTGGAACATGGAAATGAGAAGATCATTGTTGTTGAATATGTTGGTAATGGTAACCTTCGAGAACACCTTGATGGGATTCGGGGAGAAGGATTAGAAATGGGGGAGCGTCTAGACATAGCAATTGATGTAGCTCATGCAATAACTTACCTTCATATGTACACAGATAATCCAATTATCCATAGAGACATCAAAGCATCAAACATCTTAGTCACTGAGAACCTAAAGGCCAAAGTGGCAGATTTTGGTTTTGCACGGTTATCTGATGATCCTACAGCAACTCATATTTCAACTCAAGTAAAAGGAACAGCTGGTTACATGGATCCTGAGTATCTCAGAACATATCAACTCACTGAAAAAAGTGATGTTTATTCCTTTGGTGTTTTGCTTGTTGAAATGGTGACAGGAAGACATCCAATTGAACCAAAGAGACCCCTTGATGAAAGAGTGACAATCAGATGGGCAATGAAGATGCTGAAACAAGGGGATGCTGTATTTACCATGGACCCTAGGCTGAGAAGAAATCCAGCCTCCATCAAGGCAGTAAAACAGGTTCTCAAGCTAGCTTTCCAATGCGTTGCTCCTTTGAAACAATCACGGCCACCTATGAAGAACTGTGCAGAGGTTCTGTGGGAAATCCGCAAAAGTTTTAGAGATGAAACCAATTCTGATCATCCTTCTCTTCCTTCACACCATTCTGCAGATTTTCCTCAAAGGGAAAAGAATAAGCATACAGTGTTTGGCATTGAAGATGATGACAGCTATAAATTTGTCTCTGTACCTAATCATATTCATTCATAA 1395 0.3964 MKKTASPKFQQSSQRKQNHNHQVLATVNDEERHNPKTGSALKSFKNAVKKCAQIFSLFLLGKRKSASYVVGNDDRKNTSKVRGVASSSTDLSSESNTKNSSKWKFSYSYASSSTASGQLGIGNFSFEEIYKSTAKFSPDNEIGQGGFGTVYRGKLNDGSMVAVKRAKKEVIHSHLHEFKNEIYTLSQIEHRNLVRLYGYLEHGNEKIIVVEYVGNGNLREHLDGIRGEGLEMGERLDIAIDVAHAITYLHMYTDNPIIHRDIKASNILVTENLKAKVADFGFARLSDDPTATHISTQVKGTAGYMDPEYLRTYQLTEKSDVYSFGVLLVEMVTGRHPIEPKRPLDERVTIRWAMKMLKQGDAVFTMDPRLRRNPASIKAVKQVLKLAFQCVAPLKQSRPPMKNCAEVLWEIRKSFRDETNSDHPSLPSHHSADFPQREKNKHTVFGIEDDDSYKFVSVPNHIHS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5632g00011 464 CDD STKc_IRAK 142 411 - -
Vium5632g00011 464 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 67 427 IPR044652 GO:0004672
Vium5632g00011 464 SMART serkin_6 136 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5632g00011 464 MobiDBLite consensus disorder prediction 419 439 - -
Vium5632g00011 464 MobiDBLite consensus disorder prediction 73 99 - -
Vium5632g00011 464 Gene3D Phosphorylase Kinase; domain 1 94 212 - -
Vium5632g00011 464 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 100 212 - -
Vium5632g00011 464 ProSitePatterns Protein kinases ATP-binding region signature. 142 168 IPR017441 GO:0005524
Vium5632g00011 464 ProSiteProfiles Protein kinase domain profile. 136 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium5632g00011 464 MobiDBLite consensus disorder prediction 1 36 - -
Vium5632g00011 464 Pfam Protein tyrosine and serine/threonine kinase 139 408 IPR001245 GO:0004672|GO:0006468
Vium5632g00011 464 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 213 422 - -
Vium5632g00011 464 SUPERFAMILY Protein kinase-like (PK-like) 117 411 IPR011009 -
Vium5632g00011 464 MobiDBLite consensus disorder prediction 81 99 - -
Vium5632g00011 464 Gene3D Transferase(Phosphotransferase) domain 1 213 431 - -
Vium5632g00011 464 MobiDBLite consensus disorder prediction 1 24 - -
Vium5632g00011 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5632g00011 Vium-Chr5632 54442 58454 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5632g00011 108 411 Receptor kinase-like Gene Family AT1G79620 44.373 7.97e-73 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vium5632g00011 PK_Tyr_Ser-Thr 1.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5632g00011 - - gmx:100811511 793.497