Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5632g00003 ATGGGTTATTTATGTGATTTTTGTGGAGACCAGAGGTCATTGGTGTACTGTCGCAGTGATGCTGCATGCTTATGTTTGTCGTGTGATCGAAATGTTCATTCTGCTAATGCCCTATCTAGGCGTCATTCGAGAAGCCTTCTATGTGAGAGATGTAATTCACAACCTGCTTTCGTGAGGTGTGTTGAAGAGAAAATTTCGCTTTGTCAGAACTGTGATTGGTTGGCTCATGGTAGCTCACCTACTTCTTCGACACACAAGAGGCAAACAATCAATTGCTACTCTGGCTGCCCTTCAGCTGCAGAGTTTTCTTCAATATGGTCCTTTTTCTTAGATATCCCTTCTATGGGTGAAGCATGTGAGCAGGAACTGGGTTTGATGAGCATTAATGAGAATGGCAACAAGAGTGATTTGGTTCCTCCAGAAGGGACAAATGTGTCTGGTTCATCTCAAGTGACAGATCTACCCACCAAGGGTAAATTTTGGGCTGGAACATCTTCAATACCCGTGTCAGACTCAGAACCTCGTATCCTGGACCAGCTACCTGAACCTGGGAATGAATGTATGCCCAAGTTGAATTGTCCTGGGAAAAAAAATTCTGGGATATGTGAAGATGATAATCTATATGATGATTTCATCATGGATGAAGTGGATCTAGAACTTGAGAACTACCAGGAACTTTTTGGGATGGCTCTCAGTCATTCGGAAGAGCTTTTTGAAAATGGTGGAATTGAAAGCTTATTTGAGACAAAAGACATGTCTGCTAGTGCTGGTGAATCCCACTGTCACGGTGCTGTTGCTGCTGAGGGATCATCTACTGGGCTGGTCAATGCTATCCAACCAGCATGCAGCAATGCAGCATCTGCAGATTCAATGTTGAGTACAAAAACTGAACCAATTGTTTGTTTTACGGGAAGGCAATCTCAATCAAACATTTCTTTTTCTGGTGTTACCAAAGATAGTGCTGGTGACTATCAAGAATGTGATGCTTCTTCAATGCTTCTCATGGGAGAGCCTCCCTGGTGTCCTCCTTGCCCTGAGAGTTCCCTGCATTCTGCCAACCGTAGCAATGCTGTAATGCGCTATAAGGAAAAGAAGAAGACCCGGAAGTTCGAGAAGAAAGTAAGGTATGCCTCTCGAAAGGCTAGGGCCGATGTCAGAAGGCGTGTGAAGGGCCGATTTGTTAAAGCCGGTGATGTCTATGACTATGACCCTTTGAGCCAAACCAGAAGCTACTGA 1236 0.4434 MGYLCDFCGDQRSLVYCRSDAACLCLSCDRNVHSANALSRRHSRSLLCERCNSQPAFVRCVEEKISLCQNCDWLAHGSSPTSSTHKRQTINCYSGCPSAAEFSSIWSFFLDIPSMGEACEQELGLMSINENGNKSDLVPPEGTNVSGSSQVTDLPTKGKFWAGTSSIPVSDSEPRILDQLPEPGNECMPKLNCPGKKNSGICEDDNLYDDFIMDEVDLELENYQELFGMALSHSEELFENGGIESLFETKDMSASAGESHCHGAVAAEGSSTGLVNAIQPACSNAASADSMLSTKTEPIVCFTGRQSQSNISFSGVTKDSAGDYQECDASSMLLMGEPPWCPPCPESSLHSANRSNAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAGDVYDYDPLSQTRSY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5632g00003 411 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Vium5632g00003 411 CDD Bbox1_BBX-like 47 90 - -
Vium5632g00003 411 SMART bboxneu5 48 90 IPR000315 GO:0008270
Vium5632g00003 411 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vium5632g00003 411 Pfam CCT motif 354 396 IPR010402 GO:0005515
Vium5632g00003 411 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
Vium5632g00003 411 CDD Bbox1_BBX-like 4 47 - -
Vium5632g00003 411 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vium5632g00003 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5632g00003 Vium-Chr5632 10901 24929 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5632g00003 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 55.529 4.08e-149 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vium5632g00003 CCT 2.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5632g00003 - - gmx:100783016 731.095