Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5630g00002 ATGAAGAAGCCAAAACACCACTCATCGTCGGCCAACGCTGACCGGCGAGTGGAGCCTGATTCCGGTGAGTTTGTCGCCAAGATGAAGAACGGTCGCCAGAGACGGCTCAAAATCAAGCAAATGAAGTACACTTGCCAGGCGAAGATCCGCATCAGGAATGGAACCGTCGGCGTCTCGCCGACGCCGGCGGAGGACCTGGAGGGAGGGAGCAGAGAGATTCATGATCGCGTGGAGATATCTTTGTCGCTGGCGGCGGCGTCGTCGTCCTCGGAGGAGGAGGAGCGGTCATTGTCGGAGAAAAACGACGGTGTTTTGTCGTACGGGTCAACGTCTGTGATTGGGAGCAGGAAGGAGATGGAGGACGCGGTGAGTGCGGAGATAGGGTTTGCTGCGAAGGAGAAAGGGAAGTACGACTTCTTCGCGGTGTACGACGGCCACGGCGGAGCGCAGGTGGCGAAGGCGTGTCGCGAGCGGTTGCACCGGCTGGTTGCGGAGGAAGTGGAGAGGAGTGAGAGTCCCGTGGAATGGGACTGGCAGGGAGTGATGGAAGGGTGCTTCCGTAAAATGGACAGCGAGGTCGCCGGTAATGCGGCCGTCAGGACTGTGGGTTCCACGGCGGTTGTAGCTGTGATCGCGGCGGAGGAGCTTGTCGTCGCTAATTGCGGTGATTGTAGGGCTGTGTTGGGAAGAGGAGGTGAGGCCGTCGACTTGTCTAGTGATCATAAGCCCGATAGACCAGACGAGTTGATGCGAATCGAAGAGGCTGGTGGAAGGGTCATTAACTGGAATGGCCAGCGCGTGCTTGGTGTTCTTGCTACTTCAAGATCCATAGCATTGAAAAGACAGAAGAATCTTGGCTCCCTCTGGCTTTTTATTATCAGTGTCGTGAGTATGGCAGAGCAACGTTGA 909 0.5688 MKKPKHHSSSANADRRVEPDSGEFVAKMKNGRQRRLKIKQMKYTCQAKIRIRNGTVGVSPTPAEDLEGGSREIHDRVEISLSLAAASSSSEEEERSLSEKNDGVLSYGSTSVIGSRKEMEDAVSAEIGFAAKEKGKYDFFAVYDGHGGAQVAKACRERLHRLVAEEVERSESPVEWDWQGVMEGCFRKMDSEVAGNAAVRTVGSTAVVAVIAAEELVVANCGDCRAVLGRGGEAVDLSSDHKPDRPDELMRIEEAGGRVINWNGQRVLGVLATSRSIALKRQKNLGSLWLFIISVVSMAEQR 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5630g00002 302 MobiDBLite consensus disorder prediction 1 31 - -
Vium5630g00002 302 PANTHER PROTEIN PHOSPHATASE 89 278 IPR015655 GO:0004722|GO:0006470
Vium5630g00002 302 Gene3D - 98 298 IPR036457 -
Vium5630g00002 302 ProSiteProfiles PPM-type phosphatase domain profile. 106 302 IPR001932 -
Vium5630g00002 302 SMART PP2C_4 95 301 IPR001932 -
Vium5630g00002 302 SUPERFAMILY PP2C-like 103 285 IPR036457 -
Vium5630g00002 302 CDD PP2Cc 106 277 IPR001932 -
Vium5630g00002 302 Pfam Protein phosphatase 2C 107 284 IPR001932 -
Vium5630g00002 302 ProSitePatterns PPM-type phosphatase domain signature. 139 147 IPR000222 GO:0043169
Vium5630g00002 302 MobiDBLite consensus disorder prediction 84 103 - -
Vium5630g00002 302 MobiDBLite consensus disorder prediction 7 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5630g00002 Vium-Chr5630 7407 9536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5630g00002 82 277 PP2C-type Phosphatase Gene Family AT2G29380 49.537 5.92e-56 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5630g00002 K14497 - gmx:100807235 404.06